miRNA display CGI


Results 1 - 20 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18972 3' -59.6 NC_004683.1 + 26797 0.66 0.57197
Target:  5'- gGUgGUCGGUGcGCGauGCCGccggCGCACuCGa -3'
miRNA:   3'- gCAgCAGCCGC-CGC--UGGCa---GUGUG-GC- -5'
18972 3' -59.6 NC_004683.1 + 24418 0.66 0.561672
Target:  5'- uCGUCGgcuaCGGCGG-GACCaagC-CGCCGg -3'
miRNA:   3'- -GCAGCa---GCCGCCgCUGGca-GuGUGGC- -5'
18972 3' -59.6 NC_004683.1 + 25205 0.66 0.561672
Target:  5'- cCGgUGaCGGCGGCcagGACCGgcaACGCCGc -3'
miRNA:   3'- -GCaGCaGCCGCCG---CUGGCag-UGUGGC- -5'
18972 3' -59.6 NC_004683.1 + 50842 0.66 0.551425
Target:  5'- aGcCGUC-GCGa-GACCGUCGCGCCu -3'
miRNA:   3'- gCaGCAGcCGCcgCUGGCAGUGUGGc -5'
18972 3' -59.6 NC_004683.1 + 51448 0.66 0.551425
Target:  5'- gGUCGUCgaGGaUGGCGGCCaUCuugaGCACCu -3'
miRNA:   3'- gCAGCAG--CC-GCCGCUGGcAG----UGUGGc -5'
18972 3' -59.6 NC_004683.1 + 52593 0.66 0.541235
Target:  5'- -cUCGUCGGCcGCGAUCGccugCACgugcuuGCCGa -3'
miRNA:   3'- gcAGCAGCCGcCGCUGGCa---GUG------UGGC- -5'
18972 3' -59.6 NC_004683.1 + 37963 0.66 0.541235
Target:  5'- cCGUC-UUGGCagggGGCGaACCGacucaccuUCACGCCGa -3'
miRNA:   3'- -GCAGcAGCCG----CCGC-UGGC--------AGUGUGGC- -5'
18972 3' -59.6 NC_004683.1 + 9492 0.66 0.541235
Target:  5'- aGUCGguggcuugGGCGGCGGCCucccCGgGCCGa -3'
miRNA:   3'- gCAGCag------CCGCCGCUGGca--GUgUGGC- -5'
18972 3' -59.6 NC_004683.1 + 51255 0.66 0.541235
Target:  5'- gCGUUcUCGGCGGCGcGCCGgauccaguUC-CGCCa -3'
miRNA:   3'- -GCAGcAGCCGCCGC-UGGC--------AGuGUGGc -5'
18972 3' -59.6 NC_004683.1 + 9203 0.66 0.531109
Target:  5'- gGUCaGuUCGGCGGCGguGCC-UCGCuuuCCGa -3'
miRNA:   3'- gCAG-C-AGCCGCCGC--UGGcAGUGu--GGC- -5'
18972 3' -59.6 NC_004683.1 + 17301 0.66 0.531109
Target:  5'- aCGUUGUaCGGgGGCG-CCGgggucgGCACCa -3'
miRNA:   3'- -GCAGCA-GCCgCCGCuGGCag----UGUGGc -5'
18972 3' -59.6 NC_004683.1 + 42602 0.66 0.531109
Target:  5'- gGUCGUcCGGCugggguggucGGCGACCGcgacgACGCCc -3'
miRNA:   3'- gCAGCA-GCCG----------CCGCUGGCag---UGUGGc -5'
18972 3' -59.6 NC_004683.1 + 6461 0.66 0.521053
Target:  5'- uGUCGUCGaacaGGUcGCCGgggCGCACCa -3'
miRNA:   3'- gCAGCAGCcg--CCGcUGGCa--GUGUGGc -5'
18972 3' -59.6 NC_004683.1 + 4311 0.66 0.521053
Target:  5'- aGU-GUCGGCGuaGGCCGgccaCGuCACCGg -3'
miRNA:   3'- gCAgCAGCCGCcgCUGGCa---GU-GUGGC- -5'
18972 3' -59.6 NC_004683.1 + 8860 0.66 0.520051
Target:  5'- gGUCGUCGGUgucgaugcucGGCcgcgacgaggGGCCGUugcccucaccgaaCGCGCCGg -3'
miRNA:   3'- gCAGCAGCCG----------CCG----------CUGGCA-------------GUGUGGC- -5'
18972 3' -59.6 NC_004683.1 + 25233 0.67 0.515055
Target:  5'- uGUCGgugcgCGGCGuGCuGACCaacaucccgcagcugGUCGCACUGc -3'
miRNA:   3'- gCAGCa----GCCGC-CG-CUGG---------------CAGUGUGGC- -5'
18972 3' -59.6 NC_004683.1 + 46795 0.67 0.511072
Target:  5'- aGUUGcgCGGCGGCGGguCCaa-GCACCGc -3'
miRNA:   3'- gCAGCa-GCCGCCGCU--GGcagUGUGGC- -5'
18972 3' -59.6 NC_004683.1 + 51662 0.67 0.501171
Target:  5'- -uUCGUUGGUGGCcaggucagaaACCG-CACGCCGc -3'
miRNA:   3'- gcAGCAGCCGCCGc---------UGGCaGUGUGGC- -5'
18972 3' -59.6 NC_004683.1 + 44663 0.67 0.491356
Target:  5'- uGagGUCGGCGGCGcgcgugGCUuUgACGCCGg -3'
miRNA:   3'- gCagCAGCCGCCGC------UGGcAgUGUGGC- -5'
18972 3' -59.6 NC_004683.1 + 50029 0.67 0.491356
Target:  5'- uCGUCGUUGacGCGGCGugCGaCGCGuuCCu -3'
miRNA:   3'- -GCAGCAGC--CGCCGCugGCaGUGU--GGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.