miRNA display CGI


Results 1 - 20 of 281 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18976 3' -58.3 NC_004683.1 + 55742 0.66 0.63087
Target:  5'- aCGuuCGCGcACGAC-AUGGCCGCAGa -3'
miRNA:   3'- aGCcgGUGC-UGCUGcUGCUGGCGUCg -5'
18976 3' -58.3 NC_004683.1 + 10623 0.66 0.63087
Target:  5'- gCGGuCCGCGAUGccacCGACGccuACCGCGa- -3'
miRNA:   3'- aGCC-GGUGCUGCu---GCUGC---UGGCGUcg -5'
18976 3' -58.3 NC_004683.1 + 51580 0.66 0.63087
Target:  5'- -gGGCCuCGACGGgcuCGACCGUcGCc -3'
miRNA:   3'- agCCGGuGCUGCUgcuGCUGGCGuCG- -5'
18976 3' -58.3 NC_004683.1 + 40242 0.66 0.63087
Target:  5'- gCGGCCGCGGucucacacacccCG-CgGugGAUCGCAuGCa -3'
miRNA:   3'- aGCCGGUGCU------------GCuG-CugCUGGCGU-CG- -5'
18976 3' -58.3 NC_004683.1 + 30818 0.66 0.63087
Target:  5'- gCGGCCGuCGAUGGgcuacuCGAUGAgCguGCAGCc -3'
miRNA:   3'- aGCCGGU-GCUGCU------GCUGCUgG--CGUCG- -5'
18976 3' -58.3 NC_004683.1 + 56914 0.66 0.63087
Target:  5'- -gGGCCACuGAacaUGGCGcgccuucCGGCCGUGGCu -3'
miRNA:   3'- agCCGGUG-CU---GCUGCu------GCUGGCGUCG- -5'
18976 3' -58.3 NC_004683.1 + 50505 0.66 0.63087
Target:  5'- gUCGGUuuCAUGG-GACGcGCGGCUGguGCu -3'
miRNA:   3'- -AGCCG--GUGCUgCUGC-UGCUGGCguCG- -5'
18976 3' -58.3 NC_004683.1 + 8448 0.66 0.626634
Target:  5'- -gGGCCGaucaccgucaggaGACGGCGACGuaggagguGCC-CAGCu -3'
miRNA:   3'- agCCGGUg------------CUGCUGCUGC--------UGGcGUCG- -5'
18976 3' -58.3 NC_004683.1 + 25106 0.66 0.624516
Target:  5'- cUGGCCAaccCGGCGGCGuugcCGguccuggccgccgucACCGguGCg -3'
miRNA:   3'- aGCCGGU---GCUGCUGCu---GC---------------UGGCguCG- -5'
18976 3' -58.3 NC_004683.1 + 38764 0.66 0.620281
Target:  5'- gUCGaUCACGuCGACG-CGGCCaGCgAGCg -3'
miRNA:   3'- -AGCcGGUGCuGCUGCuGCUGG-CG-UCG- -5'
18976 3' -58.3 NC_004683.1 + 54070 0.66 0.620281
Target:  5'- cCaGCaGCG-CGACGGCGccuCCGCGGUg -3'
miRNA:   3'- aGcCGgUGCuGCUGCUGCu--GGCGUCG- -5'
18976 3' -58.3 NC_004683.1 + 10539 0.66 0.620281
Target:  5'- -aGGCUGCG-UGACGAaggggccaguaaCGACCGCAu- -3'
miRNA:   3'- agCCGGUGCuGCUGCU------------GCUGGCGUcg -5'
18976 3' -58.3 NC_004683.1 + 31320 0.66 0.620281
Target:  5'- gCGGUgGCGGCGAUGuCG-CCGUgaugGGUg -3'
miRNA:   3'- aGCCGgUGCUGCUGCuGCuGGCG----UCG- -5'
18976 3' -58.3 NC_004683.1 + 11451 0.66 0.620281
Target:  5'- gUCGGCgGCGACauCGACG-UUGCGGg -3'
miRNA:   3'- -AGCCGgUGCUGcuGCUGCuGGCGUCg -5'
18976 3' -58.3 NC_004683.1 + 25220 0.66 0.620281
Target:  5'- -aGGCCGCuacccgcaccGGUGACGGCGGCCaggacCGGCa -3'
miRNA:   3'- agCCGGUG----------CUGCUGCUGCUGGc----GUCG- -5'
18976 3' -58.3 NC_004683.1 + 3946 0.66 0.619223
Target:  5'- gCGGCCGUGGuCGaacugcaccuuggGCGGCGACuCGCGGa -3'
miRNA:   3'- aGCCGGUGCU-GC-------------UGCUGCUG-GCGUCg -5'
18976 3' -58.3 NC_004683.1 + 325 0.66 0.617106
Target:  5'- cUCGGCCAgcaggcgcugcgguUGGCGAUG-CGGCUGgAGa -3'
miRNA:   3'- -AGCCGGU--------------GCUGCUGCuGCUGGCgUCg -5'
18976 3' -58.3 NC_004683.1 + 55823 0.66 0.609702
Target:  5'- cUCGGCgAC-AUGGCGACGuucaacuacAUCGCAcGCa -3'
miRNA:   3'- -AGCCGgUGcUGCUGCUGC---------UGGCGU-CG- -5'
18976 3' -58.3 NC_004683.1 + 41176 0.66 0.609702
Target:  5'- cCGGCCGUGGCaGCGGCGcgggGCCGCu-- -3'
miRNA:   3'- aGCCGGUGCUGcUGCUGC----UGGCGucg -5'
18976 3' -58.3 NC_004683.1 + 49352 0.66 0.609702
Target:  5'- gUGuGCCGCGACGuCGuCGG--GCAGCg -3'
miRNA:   3'- aGC-CGGUGCUGCuGCuGCUggCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.