miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18976 5' -56.4 NC_004683.1 + 41182 0.66 0.677304
Target:  5'- aAGGcCCCGGccGUGgCAGCGgcGCGggGCCg -3'
miRNA:   3'- -UCCaGGGCU--CGUgGUCGCaaCGU--UGG- -5'
18976 5' -56.4 NC_004683.1 + 39448 0.66 0.677304
Target:  5'- uGGUCCa-AGCccauCCGGCcuUUGCGGCCu -3'
miRNA:   3'- uCCAGGgcUCGu---GGUCGc-AACGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 34799 0.66 0.677304
Target:  5'- gGGGUUCCaGGCGCaucuCGUcGCGGCCa -3'
miRNA:   3'- -UCCAGGGcUCGUGguc-GCAaCGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 12810 0.66 0.677304
Target:  5'- cGGauaCCCGGGCGaugCGGCGcUGCuGGCCa -3'
miRNA:   3'- uCCa--GGGCUCGUg--GUCGCaACG-UUGG- -5'
18976 5' -56.4 NC_004683.1 + 24862 0.66 0.674052
Target:  5'- gAGGUgCUCGAGCGCguccucgaacccguCGGCGgacUGCGaguaGCCg -3'
miRNA:   3'- -UCCA-GGGCUCGUG--------------GUCGCa--ACGU----UGG- -5'
18976 5' -56.4 NC_004683.1 + 52310 0.66 0.666451
Target:  5'- cGG-CCCGGGuCGCCgaGGCGgaccCGACCg -3'
miRNA:   3'- uCCaGGGCUC-GUGG--UCGCaac-GUUGG- -5'
18976 5' -56.4 NC_004683.1 + 6450 0.66 0.66645
Target:  5'- gAGGUCaaugCCGAGCgucgucgcGCCAGCGUcGaggacGCCa -3'
miRNA:   3'- -UCCAG----GGCUCG--------UGGUCGCAaCgu---UGG- -5'
18976 5' -56.4 NC_004683.1 + 18221 0.66 0.659922
Target:  5'- gGGGUCcggCCGccacggcgugcgguaGGUGCCGGCG--GCGACCg -3'
miRNA:   3'- -UCCAG---GGC---------------UCGUGGUCGCaaCGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 7061 0.66 0.655565
Target:  5'- cGGUCUCGAcgucugggcGCGCCGGCcgacgagcUGCAccACCg -3'
miRNA:   3'- uCCAGGGCU---------CGUGGUCGca------ACGU--UGG- -5'
18976 5' -56.4 NC_004683.1 + 9228 0.66 0.655565
Target:  5'- cGGUCCCGccugggacGCGCUGGCcg-GCGACg -3'
miRNA:   3'- uCCAGGGCu-------CGUGGUCGcaaCGUUGg -5'
18976 5' -56.4 NC_004683.1 + 56607 0.66 0.654475
Target:  5'- cAGGUCCaucggugCGGuGCGCCuaccugccauGCGgUGCGGCCg -3'
miRNA:   3'- -UCCAGG-------GCU-CGUGGu---------CGCaACGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 26496 0.66 0.653385
Target:  5'- cGGcaCCggCGGGCACCAGCGggaucagggcgGUGACCg -3'
miRNA:   3'- uCCa-GG--GCUCGUGGUCGCaa---------CGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 7362 0.66 0.652295
Target:  5'- uGGUCuacgacggcaCCGAGCACCcggaGGCGcucgaccuggauucgGCGGCCg -3'
miRNA:   3'- uCCAG----------GGCUCGUGG----UCGCaa-------------CGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 13020 0.66 0.644659
Target:  5'- ----aCCGGcCACCGGUGggGCGGCCg -3'
miRNA:   3'- uccagGGCUcGUGGUCGCaaCGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 14294 0.66 0.644659
Target:  5'- cGGGUCgCGGccacGCACCAGCaGUUugaucuCAACCu -3'
miRNA:   3'- -UCCAGgGCU----CGUGGUCG-CAAc-----GUUGG- -5'
18976 5' -56.4 NC_004683.1 + 24786 0.66 0.644658
Target:  5'- gAGGacgcgCUCGAGCACCucuucGGCGacgGCGGCg -3'
miRNA:   3'- -UCCa----GGGCUCGUGG-----UCGCaa-CGUUGg -5'
18976 5' -56.4 NC_004683.1 + 31839 0.66 0.633741
Target:  5'- uGGUCCUGGGCAUCuucgGGUGga-UAACCa -3'
miRNA:   3'- uCCAGGGCUCGUGG----UCGCaacGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 11911 0.66 0.63374
Target:  5'- cGGGcugacUCCUGAGCagcugGCgGGCGUUGauucaGGCCa -3'
miRNA:   3'- -UCC-----AGGGCUCG-----UGgUCGCAACg----UUGG- -5'
18976 5' -56.4 NC_004683.1 + 46287 0.66 0.63374
Target:  5'- cAGcGUCCCGAuGUugACCGGCugacGCGGCCc -3'
miRNA:   3'- -UC-CAGGGCU-CG--UGGUCGcaa-CGUUGG- -5'
18976 5' -56.4 NC_004683.1 + 23289 0.67 0.61191
Target:  5'- cGGUCCCcGGCACgAGCaucGUcaucccgcUGCAGCg -3'
miRNA:   3'- uCCAGGGcUCGUGgUCG---CA--------ACGUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.