miRNA display CGI


Results 1 - 20 of 115 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18977 3' -63.3 NC_004684.1 + 13690 0.66 0.42084
Target:  5'- gGUgGCCGGUucgGGCaCGCCGaagaucauCCCgACCCa -3'
miRNA:   3'- gCA-UGGCCA---UCG-GCGGC--------GGGgUGGGc -5'
18977 3' -63.3 NC_004684.1 + 50429 0.66 0.42084
Target:  5'- cCGaUGCCaaGGaGGCCGcCCGCCUgGCCgGg -3'
miRNA:   3'- -GC-AUGG--CCaUCGGC-GGCGGGgUGGgC- -5'
18977 3' -63.3 NC_004684.1 + 50754 0.66 0.42084
Target:  5'- --cACCGGgcGCaCGCCugGUCCgCACCCc -3'
miRNA:   3'- gcaUGGCCauCG-GCGG--CGGG-GUGGGc -5'
18977 3' -63.3 NC_004684.1 + 39739 0.66 0.415597
Target:  5'- gCGgagGCCGGUAccuggaggugaccguGCCGCgCGacCCCCGCCa- -3'
miRNA:   3'- -GCa--UGGCCAU---------------CGGCG-GC--GGGGUGGgc -5'
18977 3' -63.3 NC_004684.1 + 41525 0.66 0.412124
Target:  5'- --cACCGGcGGCacCGCCGCaccaCCGCCaCGg -3'
miRNA:   3'- gcaUGGCCaUCG--GCGGCGg---GGUGG-GC- -5'
18977 3' -63.3 NC_004684.1 + 54972 0.66 0.412124
Target:  5'- gGUgaACgGGUGGCCGCCGa-CCACagCGg -3'
miRNA:   3'- gCA--UGgCCAUCGGCGGCggGGUGg-GC- -5'
18977 3' -63.3 NC_004684.1 + 5921 0.66 0.412124
Target:  5'- aCG-ACCGGcUGGCCG-CGCUggCCACCgGg -3'
miRNA:   3'- -GCaUGGCC-AUCGGCgGCGG--GGUGGgC- -5'
18977 3' -63.3 NC_004684.1 + 61320 0.66 0.412124
Target:  5'- --cGCCGG--GCCGCCGCCCuCGgCgGc -3'
miRNA:   3'- gcaUGGCCauCGGCGGCGGG-GUgGgC- -5'
18977 3' -63.3 NC_004684.1 + 24162 0.66 0.403521
Target:  5'- gGUGCaggguccgcaggCGGU-GCCGCCGCCCaaaAUgCCGg -3'
miRNA:   3'- gCAUG------------GCCAuCGGCGGCGGGg--UG-GGC- -5'
18977 3' -63.3 NC_004684.1 + 15870 0.66 0.403521
Target:  5'- aCGuUGCCGGU-GUCGCCGCCgcgauaggugCCGCUg- -3'
miRNA:   3'- -GC-AUGGCCAuCGGCGGCGG----------GGUGGgc -5'
18977 3' -63.3 NC_004684.1 + 42959 0.66 0.403521
Target:  5'- --gGCCGGgcgugcGGCgGCCugguugGCCCCACCgCGc -3'
miRNA:   3'- gcaUGGCCa-----UCGgCGG------CGGGGUGG-GC- -5'
18977 3' -63.3 NC_004684.1 + 22895 0.66 0.398414
Target:  5'- -cUGCCGGUcgaccagcguguugaAGUCGCCaGCCaCGCCCu -3'
miRNA:   3'- gcAUGGCCA---------------UCGGCGG-CGGgGUGGGc -5'
18977 3' -63.3 NC_004684.1 + 3453 0.66 0.395032
Target:  5'- ----aCGGUGuUCGCCGUCUCGCCCa -3'
miRNA:   3'- gcaugGCCAUcGGCGGCGGGGUGGGc -5'
18977 3' -63.3 NC_004684.1 + 61856 0.66 0.395032
Target:  5'- gGUGCUGG-AGCUGgaCGCCUgguuCGCCCGu -3'
miRNA:   3'- gCAUGGCCaUCGGCg-GCGGG----GUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 21069 0.66 0.395032
Target:  5'- uCGgGCCGaccugcGCCGCCGCUCCGaCCGg -3'
miRNA:   3'- -GCaUGGCcau---CGGCGGCGGGGUgGGC- -5'
18977 3' -63.3 NC_004684.1 + 47171 0.66 0.395032
Target:  5'- cCGUAgCGGcGGCCaggGCCGCCgCUGCgCGg -3'
miRNA:   3'- -GCAUgGCCaUCGG---CGGCGG-GGUGgGC- -5'
18977 3' -63.3 NC_004684.1 + 43589 0.66 0.38666
Target:  5'- -cUGCCGcugcaccuGCUGCCGCUgCGCCCGc -3'
miRNA:   3'- gcAUGGCcau-----CGGCGGCGGgGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 49790 0.66 0.38666
Target:  5'- aGUGCCGGgaucAGCuCGuaGUCCUcCCCGg -3'
miRNA:   3'- gCAUGGCCa---UCG-GCggCGGGGuGGGC- -5'
18977 3' -63.3 NC_004684.1 + 59957 0.66 0.38666
Target:  5'- uGUGCUGGcGG-CGCUcguGCCgCACCCGg -3'
miRNA:   3'- gCAUGGCCaUCgGCGG---CGGgGUGGGC- -5'
18977 3' -63.3 NC_004684.1 + 10148 0.66 0.38666
Target:  5'- uCGUGCUcagccAGCCGCCGCUggCCACCgCGc -3'
miRNA:   3'- -GCAUGGcca--UCGGCGGCGG--GGUGG-GC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.