miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18978 3' -58.7 NC_004684.1 + 47373 0.66 0.609566
Target:  5'- cCGGCGGUAGUgGCGCUGAgccaGCCUucUGGg -3'
miRNA:   3'- -GUUGUCGUCG-CGCGGCUac--CGGA--GCC- -5'
18978 3' -58.7 NC_004684.1 + 22998 0.66 0.609566
Target:  5'- uCAACGGCc-UGgGCCGAcUGGCCgccgUCGGc -3'
miRNA:   3'- -GUUGUCGucGCgCGGCU-ACCGG----AGCC- -5'
18978 3' -58.7 NC_004684.1 + 51967 0.66 0.609566
Target:  5'- cCAGCAGCAGgGUgGCCac-GGUgUCGGc -3'
miRNA:   3'- -GUUGUCGUCgCG-CGGcuaCCGgAGCC- -5'
18978 3' -58.7 NC_004684.1 + 27017 0.66 0.609566
Target:  5'- uCAACAGCcaGGCaccggGUGCCGGUGGCaUUGu -3'
miRNA:   3'- -GUUGUCG--UCG-----CGCGGCUACCGgAGCc -5'
18978 3' -58.7 NC_004684.1 + 56178 0.66 0.609566
Target:  5'- aCGACGGCGGCGCuaUCGAgcGCC-CGGu -3'
miRNA:   3'- -GUUGUCGUCGCGc-GGCUacCGGaGCC- -5'
18978 3' -58.7 NC_004684.1 + 61251 0.66 0.609566
Target:  5'- gAACAGCAGgGCcauGgCGgcGGUgUCGGg -3'
miRNA:   3'- gUUGUCGUCgCG---CgGCuaCCGgAGCC- -5'
18978 3' -58.7 NC_004684.1 + 18355 0.66 0.609566
Target:  5'- aGGCGGCcgGGCGUGCCGuu-GCCgUCGa -3'
miRNA:   3'- gUUGUCG--UCGCGCGGCuacCGG-AGCc -5'
18978 3' -58.7 NC_004684.1 + 22583 0.66 0.609566
Target:  5'- -uACGGCGGUGUucgGCUucaaaGGCCUCGGu -3'
miRNA:   3'- guUGUCGUCGCG---CGGcua--CCGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 27619 0.66 0.598984
Target:  5'- cCAACAGCucaCGCG-UGGUGGCgcacCUCGGu -3'
miRNA:   3'- -GUUGUCGuc-GCGCgGCUACCG----GAGCC- -5'
18978 3' -58.7 NC_004684.1 + 5660 0.66 0.598984
Target:  5'- aGGCGGCGGUGgagaagcacaaCGCCGGUGGCaUCc- -3'
miRNA:   3'- gUUGUCGUCGC-----------GCGGCUACCGgAGcc -5'
18978 3' -58.7 NC_004684.1 + 48654 0.66 0.598984
Target:  5'- -cGCuGCAcCGCGCCGGagaGGCCUucacCGGg -3'
miRNA:   3'- guUGuCGUcGCGCGGCUa--CCGGA----GCC- -5'
18978 3' -58.7 NC_004684.1 + 32672 0.66 0.598984
Target:  5'- uGGCGGCGGCaugGCUac-GGCCUCGGc -3'
miRNA:   3'- gUUGUCGUCGcg-CGGcuaCCGGAGCC- -5'
18978 3' -58.7 NC_004684.1 + 52252 0.66 0.598984
Target:  5'- aCAGCGGCGGUaCGUCGAagcUGGCgUUGu -3'
miRNA:   3'- -GUUGUCGUCGcGCGGCU---ACCGgAGCc -5'
18978 3' -58.7 NC_004684.1 + 67042 0.66 0.598984
Target:  5'- uCGACGGCuGgggcgagauCGCGCCGGaGGCCUuCGc -3'
miRNA:   3'- -GUUGUCGuC---------GCGCGGCUaCCGGA-GCc -5'
18978 3' -58.7 NC_004684.1 + 59494 0.66 0.592646
Target:  5'- cCAGCGGCcccaacggagcaccgGGCGCGUCGuaGGCCUgCGc -3'
miRNA:   3'- -GUUGUCG---------------UCGCGCGGCuaCCGGA-GCc -5'
18978 3' -58.7 NC_004684.1 + 38598 0.66 0.588427
Target:  5'- uCAAuCGGCucGCcgucgGCGUCGGUGGCCUUGc -3'
miRNA:   3'- -GUU-GUCGu-CG-----CGCGGCUACCGGAGCc -5'
18978 3' -58.7 NC_004684.1 + 63579 0.66 0.588427
Target:  5'- uGGC-GCAgGCGCaGCUGGaGGCCUCGc -3'
miRNA:   3'- gUUGuCGU-CGCG-CGGCUaCCGGAGCc -5'
18978 3' -58.7 NC_004684.1 + 46289 0.66 0.577905
Target:  5'- gCGGCGGCcgAGCGCGuuGc-GGCgCUUGGc -3'
miRNA:   3'- -GUUGUCG--UCGCGCggCuaCCG-GAGCC- -5'
18978 3' -58.7 NC_004684.1 + 59634 0.66 0.577905
Target:  5'- aCAACGGC-GCGCGCUGgcGGUgcaGGa -3'
miRNA:   3'- -GUUGUCGuCGCGCGGCuaCCGgagCC- -5'
18978 3' -58.7 NC_004684.1 + 34562 0.66 0.577905
Target:  5'- --uCGGCGGUGCcggaCCGGguGCCUCGGg -3'
miRNA:   3'- guuGUCGUCGCGc---GGCUacCGGAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.