miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18982 3' -65 NC_004684.1 + 19623 0.66 0.361019
Target:  5'- cCCGgCGCACccgcaGCUGGCguugaGCCagugcguGCCGUCc -3'
miRNA:   3'- -GGCgGCGUG-----CGACCGg----CGG-------CGGCAGc -5'
18982 3' -65 NC_004684.1 + 42663 0.66 0.357118
Target:  5'- cCUGCuCGCugGUcuucuUGGCgGCCacgccgaagccgaacGCCGUCa -3'
miRNA:   3'- -GGCG-GCGugCG-----ACCGgCGG---------------CGGCAGc -5'
18982 3' -65 NC_004684.1 + 28576 0.66 0.354019
Target:  5'- aCCGgUGUGCgGC-GGCUGCCuGCCgGUCGg -3'
miRNA:   3'- -GGCgGCGUG-CGaCCGGCGG-CGG-CAGC- -5'
18982 3' -65 NC_004684.1 + 9755 0.66 0.354019
Target:  5'- gCCGuacaCCGCGCGCUucaCCGCCGCCc--- -3'
miRNA:   3'- -GGC----GGCGUGCGAcc-GGCGGCGGcagc -5'
18982 3' -65 NC_004684.1 + 38147 0.66 0.354019
Target:  5'- aCGCauuCGCGCGCaUGGUCGCCGgacgauaacaCCG-CGa -3'
miRNA:   3'- gGCG---GCGUGCG-ACCGGCGGC----------GGCaGC- -5'
18982 3' -65 NC_004684.1 + 34720 0.66 0.354019
Target:  5'- uCCGauCCGguCGuCUGGCaCGUCGUCGUgGa -3'
miRNA:   3'- -GGC--GGCguGC-GACCG-GCGGCGGCAgC- -5'
18982 3' -65 NC_004684.1 + 47591 0.66 0.354019
Target:  5'- gUGCUcgGCgAUGUaGGCCGCacacCGCCGUCGg -3'
miRNA:   3'- gGCGG--CG-UGCGaCCGGCG----GCGGCAGC- -5'
18982 3' -65 NC_004684.1 + 56064 0.66 0.353247
Target:  5'- uUCGCCGUAgacgccgaugaccCGCUGGagcgcggCGUCGgCGUCGg -3'
miRNA:   3'- -GGCGGCGU-------------GCGACCg------GCGGCgGCAGC- -5'
18982 3' -65 NC_004684.1 + 50215 0.66 0.352477
Target:  5'- cCCGCCGaucaacCugGCcaucgaggugggGGCCaGCCGCCugGUCGu -3'
miRNA:   3'- -GGCGGC------GugCGa-----------CCGG-CGGCGG--CAGC- -5'
18982 3' -65 NC_004684.1 + 22815 0.66 0.351707
Target:  5'- aCCgGUCGCGCGUgccagccacggccuUGGCCacguccugcGCCGCCGg-- -3'
miRNA:   3'- -GG-CGGCGUGCG--------------ACCGG---------CGGCGGCagc -5'
18982 3' -65 NC_004684.1 + 26457 0.66 0.346355
Target:  5'- aCgGCgGCACGcCUGGCCGCgacagcgugccCGCCa--- -3'
miRNA:   3'- -GgCGgCGUGC-GACCGGCG-----------GCGGcagc -5'
18982 3' -65 NC_004684.1 + 26568 0.66 0.346355
Target:  5'- uCCGgCGCGCcCUGGCgCGCgGCgGUg- -3'
miRNA:   3'- -GGCgGCGUGcGACCG-GCGgCGgCAgc -5'
18982 3' -65 NC_004684.1 + 49090 0.66 0.346355
Target:  5'- gCCGCCaaccgGCAgGUgccacaGGUCGCCGUcggCGUCGg -3'
miRNA:   3'- -GGCGG-----CGUgCGa-----CCGGCGGCG---GCAGC- -5'
18982 3' -65 NC_004684.1 + 19688 0.66 0.346355
Target:  5'- aCCGCCaGCAC-CUcGGCCGCCGgaCUGg-- -3'
miRNA:   3'- -GGCGG-CGUGcGA-CCGGCGGC--GGCagc -5'
18982 3' -65 NC_004684.1 + 36887 0.66 0.346355
Target:  5'- gUGUCGUA-GCUGaccgaGCCGCCGCCGa-- -3'
miRNA:   3'- gGCGGCGUgCGAC-----CGGCGGCGGCagc -5'
18982 3' -65 NC_004684.1 + 24492 0.66 0.346355
Target:  5'- aCCGCCGgGgGCgGuGCCGCaggGCCGcgCGu -3'
miRNA:   3'- -GGCGGCgUgCGaC-CGGCGg--CGGCa-GC- -5'
18982 3' -65 NC_004684.1 + 42506 0.66 0.345595
Target:  5'- -gGCCaacgcgaucaacgGCGCGCUcaCCGCCGUgGUCGg -3'
miRNA:   3'- ggCGG-------------CGUGCGAccGGCGGCGgCAGC- -5'
18982 3' -65 NC_004684.1 + 48783 0.66 0.341814
Target:  5'- aCGCCGgGCG--GGCCgaugaugcaggacagGCCGCCGUUc -3'
miRNA:   3'- gGCGGCgUGCgaCCGG---------------CGGCGGCAGc -5'
18982 3' -65 NC_004684.1 + 65448 0.66 0.33881
Target:  5'- aCCGUCGCccUGgUGGCCcuggggGCCGCCaUCGu -3'
miRNA:   3'- -GGCGGCGu-GCgACCGG------CGGCGGcAGC- -5'
18982 3' -65 NC_004684.1 + 42773 0.66 0.33881
Target:  5'- aUCGuuGaaCugGUUGGCCaCCGCCGUg- -3'
miRNA:   3'- -GGCggC--GugCGACCGGcGGCGGCAgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.