miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18985 5' -59.8 NC_004684.1 + 5136 0.66 0.498428
Target:  5'- gUGggaGCGCCGGGUgccagACGCGUggUGGCCAc -3'
miRNA:   3'- aACg--UGUGGCUCG-----UGCGCA--GCCGGUa -5'
18985 5' -59.8 NC_004684.1 + 36217 0.66 0.498428
Target:  5'- cUGCGCagcguggccaccGCCGAgaccGCugGCGU-GGCCAa -3'
miRNA:   3'- aACGUG------------UGGCU----CGugCGCAgCCGGUa -5'
18985 5' -59.8 NC_004684.1 + 12046 0.66 0.498428
Target:  5'- gUGUGCGCCGcaggugccaGGCugGCGaccaUGGCCAg -3'
miRNA:   3'- aACGUGUGGC---------UCGugCGCa---GCCGGUa -5'
18985 5' -59.8 NC_004684.1 + 60920 0.66 0.498428
Target:  5'- -gGcCACGgCGucGCACGCcUCGGCCAg -3'
miRNA:   3'- aaC-GUGUgGCu-CGUGCGcAGCCGGUa -5'
18985 5' -59.8 NC_004684.1 + 8156 0.66 0.492369
Target:  5'- -aGCAgaucgucaaccagauCGCCGGGgGCGCGcUgGGCCAg -3'
miRNA:   3'- aaCGU---------------GUGGCUCgUGCGC-AgCCGGUa -5'
18985 5' -59.8 NC_004684.1 + 12903 0.66 0.488349
Target:  5'- -aGC-CGCCGuccucgGGCGCGuCGUCGGCgGg -3'
miRNA:   3'- aaCGuGUGGC------UCGUGC-GCAGCCGgUa -5'
18985 5' -59.8 NC_004684.1 + 12089 0.66 0.488349
Target:  5'- gUGCugGCC---CGCGCGgCGGCCAUc -3'
miRNA:   3'- aACGugUGGcucGUGCGCaGCCGGUA- -5'
18985 5' -59.8 NC_004684.1 + 26227 0.66 0.488349
Target:  5'- -cGCGCucaaGCCGAuCAUGgaGUCGGCCAUc -3'
miRNA:   3'- aaCGUG----UGGCUcGUGCg-CAGCCGGUA- -5'
18985 5' -59.8 NC_004684.1 + 24727 0.66 0.478368
Target:  5'- gUGCGCGCCGGaaCGCGUagacGUUGGCCu- -3'
miRNA:   3'- aACGUGUGGCUc-GUGCG----CAGCCGGua -5'
18985 5' -59.8 NC_004684.1 + 49546 0.66 0.478368
Target:  5'- gUGCGCGguggccgacuUCGGGCugGCGU-GGCCu- -3'
miRNA:   3'- aACGUGU----------GGCUCGugCGCAgCCGGua -5'
18985 5' -59.8 NC_004684.1 + 22255 0.66 0.478368
Target:  5'- -cGCAgGCgCGAGCAUgggaccgccugGCGgCGGCCAa -3'
miRNA:   3'- aaCGUgUG-GCUCGUG-----------CGCaGCCGGUa -5'
18985 5' -59.8 NC_004684.1 + 26664 0.66 0.478368
Target:  5'- -cGCACACCGccGCGCGCcagggCGcGCCGg -3'
miRNA:   3'- aaCGUGUGGCu-CGUGCGca---GC-CGGUa -5'
18985 5' -59.8 NC_004684.1 + 15605 0.66 0.477376
Target:  5'- gUGCGCuACCGGGUgcccgaaggcaacGCGCGcgaGGCCGg -3'
miRNA:   3'- aACGUG-UGGCUCG-------------UGCGCag-CCGGUa -5'
18985 5' -59.8 NC_004684.1 + 65850 0.66 0.468489
Target:  5'- gUGCAcCGCaugCGAGCGCGgGUCGcGUCGUc -3'
miRNA:   3'- aACGU-GUG---GCUCGUGCgCAGC-CGGUA- -5'
18985 5' -59.8 NC_004684.1 + 43971 0.66 0.468489
Target:  5'- -aGCAUcaGCCGuGCGCggGCGUaccCGGCCAg -3'
miRNA:   3'- aaCGUG--UGGCuCGUG--CGCA---GCCGGUa -5'
18985 5' -59.8 NC_004684.1 + 2540 0.66 0.468489
Target:  5'- cUGCgGCACCugcgugGAGCGCGCGgaGGCCu- -3'
miRNA:   3'- aACG-UGUGG------CUCGUGCGCagCCGGua -5'
18985 5' -59.8 NC_004684.1 + 32479 0.66 0.468489
Target:  5'- -cGCACAUa-GGCACGCGUC-GUCGUg -3'
miRNA:   3'- aaCGUGUGgcUCGUGCGCAGcCGGUA- -5'
18985 5' -59.8 NC_004684.1 + 39757 0.66 0.468489
Target:  5'- -aGCGCGagcaCGAgGCACGCGgaGGCCGg -3'
miRNA:   3'- aaCGUGUg---GCU-CGUGCGCagCCGGUa -5'
18985 5' -59.8 NC_004684.1 + 41781 0.66 0.465545
Target:  5'- -cGCACGCCGucGcCGCGCuggguguugccgagGUCGGCCc- -3'
miRNA:   3'- aaCGUGUGGCu-C-GUGCG--------------CAGCCGGua -5'
18985 5' -59.8 NC_004684.1 + 11534 0.66 0.462611
Target:  5'- gUGCGCGucggcccggucagcuCCGGGUugGCGaagugggCGGCCGg -3'
miRNA:   3'- aACGUGU---------------GGCUCGugCGCa------GCCGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.