miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18986 3' -52.7 NC_004684.1 + 21747 0.66 0.916231
Target:  5'- aCACCGaGAUGGAGaACGCcgaGAgCGCCu -3'
miRNA:   3'- cGUGGC-CUACUUCaUGUG---CUgGUGGc -5'
18986 3' -52.7 NC_004684.1 + 24778 0.66 0.916231
Target:  5'- gGCACCGGGccgcUGGucgAUACGGCCAaggCGg -3'
miRNA:   3'- -CGUGGCCU----ACUucaUGUGCUGGUg--GC- -5'
18986 3' -52.7 NC_004684.1 + 55799 0.66 0.916231
Target:  5'- -gACCGGGUGGuccGGUgaGCGCGugCgagcacgggguGCCGg -3'
miRNA:   3'- cgUGGCCUACU---UCA--UGUGCugG-----------UGGC- -5'
18986 3' -52.7 NC_004684.1 + 24493 0.66 0.916231
Target:  5'- cCGCCGGggGcGGUgccGCAgGGCCGCgCGu -3'
miRNA:   3'- cGUGGCCuaCuUCA---UGUgCUGGUG-GC- -5'
18986 3' -52.7 NC_004684.1 + 55672 0.66 0.916231
Target:  5'- aGCACCGccuu-GGUGCcuggaccccCGGCCACCGg -3'
miRNA:   3'- -CGUGGCcuacuUCAUGu--------GCUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 66557 0.66 0.916231
Target:  5'- cCACCGGGUGgcGgcguggagACAacGCCGCCa -3'
miRNA:   3'- cGUGGCCUACuuCa-------UGUgcUGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 20424 0.66 0.916231
Target:  5'- uGCACCGGgcGAcGccgAUcucgAUGGCCGCCGc -3'
miRNA:   3'- -CGUGGCCuaCUuCa--UG----UGCUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 38486 0.66 0.916231
Target:  5'- gGCACCGGc----GUcaGCAaGGCCACCGa -3'
miRNA:   3'- -CGUGGCCuacuuCA--UGUgCUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 44973 0.66 0.916231
Target:  5'- cCACCuGGuuccguccGGUGCGCGACC-CCGg -3'
miRNA:   3'- cGUGG-CCuacu----UCAUGUGCUGGuGGC- -5'
18986 3' -52.7 NC_004684.1 + 10212 0.66 0.915613
Target:  5'- aGCGCUGGAggUGccugcccAGGUGCGCGAgCAgCUGg -3'
miRNA:   3'- -CGUGGCCU--AC-------UUCAUGUGCUgGU-GGC- -5'
18986 3' -52.7 NC_004684.1 + 314 0.66 0.912481
Target:  5'- cGCGCCGGggGuucuuguAGUAggugcucagcguugcCAgGGCCACCu -3'
miRNA:   3'- -CGUGGCCuaCu------UCAU---------------GUgCUGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 41310 0.66 0.909927
Target:  5'- uGCACUuccaGAUGGGcUACggcaccGCGACCGCCGa -3'
miRNA:   3'- -CGUGGc---CUACUUcAUG------UGCUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 15792 0.66 0.909927
Target:  5'- aCACCGGcaac-GUGCAC-ACCACCa -3'
miRNA:   3'- cGUGGCCuacuuCAUGUGcUGGUGGc -5'
18986 3' -52.7 NC_004684.1 + 43540 0.66 0.909927
Target:  5'- uGCGCCaccuccgaacGGUGAGGUAC-CGGCCAUg- -3'
miRNA:   3'- -CGUGGc---------CUACUUCAUGuGCUGGUGgc -5'
18986 3' -52.7 NC_004684.1 + 21440 0.66 0.909927
Target:  5'- cGUGCUGGAcgacgacGGAGaggACAcccCGACCACCGa -3'
miRNA:   3'- -CGUGGCCUa------CUUCa--UGU---GCUGGUGGC- -5'
18986 3' -52.7 NC_004684.1 + 37747 0.66 0.909282
Target:  5'- cGCACCGGGUcgaugccugaccgGgcGgcCAUGGCCAgCGc -3'
miRNA:   3'- -CGUGGCCUA-------------CuuCauGUGCUGGUgGC- -5'
18986 3' -52.7 NC_004684.1 + 23688 0.66 0.905355
Target:  5'- aGCGCgCGGGUGAuaccaccggcggcGGUguucGCGCGGCCcggcaggcuguccagGCCGc -3'
miRNA:   3'- -CGUG-GCCUACU-------------UCA----UGUGCUGG---------------UGGC- -5'
18986 3' -52.7 NC_004684.1 + 46400 0.66 0.903355
Target:  5'- -gGCCgGGAUGGucgGGUcCACGGCCAgCa -3'
miRNA:   3'- cgUGG-CCUACU---UCAuGUGCUGGUgGc -5'
18986 3' -52.7 NC_004684.1 + 23650 0.66 0.903355
Target:  5'- gGCACCGcugcUGAccgGGUACAcCGACgGCCu -3'
miRNA:   3'- -CGUGGCcu--ACU---UCAUGU-GCUGgUGGc -5'
18986 3' -52.7 NC_004684.1 + 18962 0.66 0.903355
Target:  5'- cGCGCUGG-UGcccuGAGU--GCGGCCACCc -3'
miRNA:   3'- -CGUGGCCuAC----UUCAugUGCUGGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.