miRNA display CGI


Results 1 - 20 of 361 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18986 5' -63.5 NC_004684.1 + 2691 0.65 0.3848
Target:  5'- gGCACCgcauccccggccuGGCCgGUGCCGggggcaaguGCGCCACaCCGc -3'
miRNA:   3'- gCGUGG-------------UCGG-CGUGGU---------CGCGGUG-GGC- -5'
18986 5' -63.5 NC_004684.1 + 15750 0.66 0.37731
Target:  5'- uGCACggccagCAGCUGCG-CAGCGgCACCUa -3'
miRNA:   3'- gCGUG------GUCGGCGUgGUCGCgGUGGGc -5'
18986 5' -63.5 NC_004684.1 + 16586 0.66 0.37731
Target:  5'- gGUACC-GCC--GCCAGCGUCugCUGg -3'
miRNA:   3'- gCGUGGuCGGcgUGGUCGCGGugGGC- -5'
18986 5' -63.5 NC_004684.1 + 15821 0.66 0.37731
Target:  5'- aGCGacCCGGUgGCGCgCGGCaucGCCACaCCGa -3'
miRNA:   3'- gCGU--GGUCGgCGUG-GUCG---CGGUG-GGC- -5'
18986 5' -63.5 NC_004684.1 + 57971 0.66 0.37731
Target:  5'- gGcCACCAGCCaGCACCGGUccugGCgUGCCgGg -3'
miRNA:   3'- gC-GUGGUCGG-CGUGGUCG----CG-GUGGgC- -5'
18986 5' -63.5 NC_004684.1 + 51788 0.66 0.37731
Target:  5'- gGCACCGGUaaaGguCCGGCGCUGgUCa -3'
miRNA:   3'- gCGUGGUCGg--CguGGUCGCGGUgGGc -5'
18986 5' -63.5 NC_004684.1 + 29207 0.66 0.37731
Target:  5'- uCGCACguGCUGguCUGGCGCaGCUCa -3'
miRNA:   3'- -GCGUGguCGGCguGGUCGCGgUGGGc -5'
18986 5' -63.5 NC_004684.1 + 45248 0.66 0.37731
Target:  5'- gGC-CCGGCagccaGCGCUGGuCGCgGCCCu -3'
miRNA:   3'- gCGuGGUCGg----CGUGGUC-GCGgUGGGc -5'
18986 5' -63.5 NC_004684.1 + 64386 0.66 0.37731
Target:  5'- uGguCCGGCaucaGCAUgGugacgaagguGCGCCGCCCGc -3'
miRNA:   3'- gCguGGUCGg---CGUGgU----------CGCGGUGGGC- -5'
18986 5' -63.5 NC_004684.1 + 13157 0.66 0.37731
Target:  5'- gCGCACCgAGUCGaugcCCAGCGCgAUCUc -3'
miRNA:   3'- -GCGUGG-UCGGCgu--GGUCGCGgUGGGc -5'
18986 5' -63.5 NC_004684.1 + 15616 0.66 0.37731
Target:  5'- gCGgAUCAG-CGCcuCCAGCGCCcggcCCCGg -3'
miRNA:   3'- -GCgUGGUCgGCGu-GGUCGCGGu---GGGC- -5'
18986 5' -63.5 NC_004684.1 + 20424 0.66 0.37731
Target:  5'- uGCACCGGgCGaCGCCgaucucgauGGcCGCCGCCg- -3'
miRNA:   3'- gCGUGGUCgGC-GUGG---------UC-GCGGUGGgc -5'
18986 5' -63.5 NC_004684.1 + 61939 0.66 0.37731
Target:  5'- gGCACCcGCCGgGCCuGGUGCa--CCGg -3'
miRNA:   3'- gCGUGGuCGGCgUGG-UCGCGgugGGC- -5'
18986 5' -63.5 NC_004684.1 + 58409 0.66 0.37731
Target:  5'- gGC-CCGGCCGCcggaaccccGCCGGUuGCC-UCCGg -3'
miRNA:   3'- gCGuGGUCGGCG---------UGGUCG-CGGuGGGC- -5'
18986 5' -63.5 NC_004684.1 + 11420 0.66 0.37731
Target:  5'- ---cCCGGCCGC-CCAcuuCGCCaACCCGg -3'
miRNA:   3'- gcguGGUCGGCGuGGUc--GCGG-UGGGC- -5'
18986 5' -63.5 NC_004684.1 + 59584 0.66 0.374835
Target:  5'- -nCAUCAGCCGCACCAcccggucacaucccGCGCaccaauGCUCGa -3'
miRNA:   3'- gcGUGGUCGGCGUGGU--------------CGCGg-----UGGGC- -5'
18986 5' -63.5 NC_004684.1 + 49613 0.66 0.369104
Target:  5'- uCGUugCGGCUG-GCCGGUGUCcaGCCCa -3'
miRNA:   3'- -GCGugGUCGGCgUGGUCGCGG--UGGGc -5'
18986 5' -63.5 NC_004684.1 + 52904 0.66 0.369104
Target:  5'- aGCGuCCGGCCaGCACggCGGCGUgGCCg- -3'
miRNA:   3'- gCGU-GGUCGG-CGUG--GUCGCGgUGGgc -5'
18986 5' -63.5 NC_004684.1 + 52314 0.66 0.369104
Target:  5'- uCGCGCgCAGCUGCGCgGuGCGCagGCCa- -3'
miRNA:   3'- -GCGUG-GUCGGCGUGgU-CGCGg-UGGgc -5'
18986 5' -63.5 NC_004684.1 + 19741 0.66 0.369104
Target:  5'- gGCACCuggAGCgugcaGUACCuGCGCgGCCUGc -3'
miRNA:   3'- gCGUGG---UCGg----CGUGGuCGCGgUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.