miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18988 3' -53 NC_004684.1 + 31822 0.66 0.897977
Target:  5'- aGGGCCGUCGGC-GGCGguGUGuCGCc -3'
miRNA:   3'- -CCUGGCGGUCGgCUGCauUAUuGCGu -5'
18988 3' -53 NC_004684.1 + 51057 0.66 0.897977
Target:  5'- gGGuCgGCCua-CGACGUGcUGGCGCAc -3'
miRNA:   3'- -CCuGgCGGucgGCUGCAUuAUUGCGU- -5'
18988 3' -53 NC_004684.1 + 65189 0.66 0.897977
Target:  5'- cGGACgaCGCCAcccuGCuCGACGgcAUGaucaccGCGCAg -3'
miRNA:   3'- -CCUG--GCGGU----CG-GCUGCauUAU------UGCGU- -5'
18988 3' -53 NC_004684.1 + 56120 0.66 0.897977
Target:  5'- aGGCCcacgguggugGCCAGCa-GCGUGGUGguGCGCGa -3'
miRNA:   3'- cCUGG----------CGGUCGgcUGCAUUAU--UGCGU- -5'
18988 3' -53 NC_004684.1 + 45112 0.66 0.897977
Target:  5'- cGGcAUCGUCGguGCCGACGgcAUGAC-CAa -3'
miRNA:   3'- -CC-UGGCGGU--CGGCUGCauUAUUGcGU- -5'
18988 3' -53 NC_004684.1 + 46845 0.66 0.897977
Target:  5'- ---gCGCuCAGCugCGGCGUAGUAaccGCGCAu -3'
miRNA:   3'- ccugGCG-GUCG--GCUGCAUUAU---UGCGU- -5'
18988 3' -53 NC_004684.1 + 11654 0.66 0.897977
Target:  5'- cGGCCacGCCAGCaCGGCGgcc-AACGUg -3'
miRNA:   3'- cCUGG--CGGUCG-GCUGCauuaUUGCGu -5'
18988 3' -53 NC_004684.1 + 52811 0.66 0.895883
Target:  5'- aGGACagCGCCuacgagcguggcgaGGCCGACGg----GCGCGa -3'
miRNA:   3'- -CCUG--GCGG--------------UCGGCUGCauuauUGCGU- -5'
18988 3' -53 NC_004684.1 + 46412 0.66 0.890904
Target:  5'- --uUCGCCAGCCuccaGACGc--UGGCGCAc -3'
miRNA:   3'- ccuGGCGGUCGG----CUGCauuAUUGCGU- -5'
18988 3' -53 NC_004684.1 + 49037 0.66 0.890904
Target:  5'- --cCCGCCcGCCGACGUGccGUucGGCGaCGa -3'
miRNA:   3'- ccuGGCGGuCGGCUGCAU--UA--UUGC-GU- -5'
18988 3' -53 NC_004684.1 + 28084 0.66 0.890904
Target:  5'- cGGGCCGCC-GCgCGACccgcaccgGGUggUGCGg -3'
miRNA:   3'- -CCUGGCGGuCG-GCUGca------UUAuuGCGU- -5'
18988 3' -53 NC_004684.1 + 13642 0.66 0.890904
Target:  5'- -cGCCGCCGcGCaccugCGugGUGucucGUGGCGCAc -3'
miRNA:   3'- ccUGGCGGU-CG-----GCugCAU----UAUUGCGU- -5'
18988 3' -53 NC_004684.1 + 53745 0.66 0.890904
Target:  5'- cGACgGCCAGgaacaCCGAgGUGGUGAUGg- -3'
miRNA:   3'- cCUGgCGGUC-----GGCUgCAUUAUUGCgu -5'
18988 3' -53 NC_004684.1 + 40163 0.66 0.890904
Target:  5'- aGGACgGCCuuGCUGGCGgcgAAgcucauGCGCu -3'
miRNA:   3'- -CCUGgCGGu-CGGCUGCa--UUau----UGCGu -5'
18988 3' -53 NC_004684.1 + 16445 0.66 0.890904
Target:  5'- cGGCCGCCAGCUuGuCGgcc-AGCGCc -3'
miRNA:   3'- cCUGGCGGUCGG-CuGCauuaUUGCGu -5'
18988 3' -53 NC_004684.1 + 47185 0.66 0.890183
Target:  5'- aGGGCCGCCGcuGCgCGGCGaacggugcggcggUGGUAgguaugcaucaGCGCAc -3'
miRNA:   3'- -CCUGGCGGU--CG-GCUGC-------------AUUAU-----------UGCGU- -5'
18988 3' -53 NC_004684.1 + 12325 0.66 0.883572
Target:  5'- cGGAUCGCC-GCCGucgggcggcACGUAccggaacccgGUGAUGCu -3'
miRNA:   3'- -CCUGGCGGuCGGC---------UGCAU----------UAUUGCGu -5'
18988 3' -53 NC_004684.1 + 28139 0.66 0.883572
Target:  5'- gGGGCCGaCCA-CCGGCaUGAUcuCGCGc -3'
miRNA:   3'- -CCUGGC-GGUcGGCUGcAUUAuuGCGU- -5'
18988 3' -53 NC_004684.1 + 48042 0.66 0.883572
Target:  5'- -cACCGCCAGCCG-UGcc--GACGCc -3'
miRNA:   3'- ccUGGCGGUCGGCuGCauuaUUGCGu -5'
18988 3' -53 NC_004684.1 + 5752 0.66 0.883572
Target:  5'- uGGACgGCCaaGGgUGACGcGGUGggGCGCAg -3'
miRNA:   3'- -CCUGgCGG--UCgGCUGCaUUAU--UGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.