miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18989 5' -58.7 NC_004684.1 + 48776 0.71 0.270271
Target:  5'- cUUGCCGAc--GCCGGGCgGGCCGAUg -3'
miRNA:   3'- cAGCGGCUagaCGGUCCGgCUGGUUA- -5'
18989 5' -58.7 NC_004684.1 + 46909 0.68 0.413325
Target:  5'- -cCGCCGcAUCccCCAGGaCCGGCCAAc -3'
miRNA:   3'- caGCGGC-UAGacGGUCC-GGCUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 45331 0.77 0.122852
Target:  5'- -gCGCUGG-CUGCCGGGCCuGACCAGc -3'
miRNA:   3'- caGCGGCUaGACGGUCCGG-CUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 43128 0.72 0.263617
Target:  5'- uGUCGCgCGAcUUGcCCAGGCgGGCCAGg -3'
miRNA:   3'- -CAGCG-GCUaGAC-GGUCCGgCUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 42856 0.66 0.562556
Target:  5'- -cCGCUcaaaccgggGAUCgcaccgGCCAGGCCG-CCAAc -3'
miRNA:   3'- caGCGG---------CUAGa-----CGGUCCGGCuGGUUa -5'
18989 5' -58.7 NC_004684.1 + 41774 0.68 0.412411
Target:  5'- cGUCGCCGcgCuggguguUGCCgAGGUCGGCCc-- -3'
miRNA:   3'- -CAGCGGCuaG-------ACGG-UCCGGCUGGuua -5'
18989 5' -58.7 NC_004684.1 + 41648 0.67 0.514594
Target:  5'- aUCGCCuccggugcggcguacGAag-GCCGGGCCGACCu-- -3'
miRNA:   3'- cAGCGG---------------CUagaCGGUCCGGCUGGuua -5'
18989 5' -58.7 NC_004684.1 + 41340 0.7 0.336292
Target:  5'- -cCGCCGA-CgGCCGGGCCaaGGCCAc- -3'
miRNA:   3'- caGCGGCUaGaCGGUCCGG--CUGGUua -5'
18989 5' -58.7 NC_004684.1 + 40222 0.71 0.291046
Target:  5'- aUCGCCGAggUCggUGCCgAGGCCG-CCAGc -3'
miRNA:   3'- cAGCGGCU--AG--ACGG-UCCGGCuGGUUa -5'
18989 5' -58.7 NC_004684.1 + 36922 0.67 0.510498
Target:  5'- aUCGcCCGGUCgagGCCGGGUgGACa--- -3'
miRNA:   3'- cAGC-GGCUAGa--CGGUCCGgCUGguua -5'
18989 5' -58.7 NC_004684.1 + 36365 0.66 0.573155
Target:  5'- -cCGCCucguUCUugGCCAGGCCG-CCGGa -3'
miRNA:   3'- caGCGGcu--AGA--CGGUCCGGCuGGUUa -5'
18989 5' -58.7 NC_004684.1 + 35895 0.72 0.250708
Target:  5'- uUCGgCGGUCgcgGCCAGGUgGACCGc- -3'
miRNA:   3'- cAGCgGCUAGa--CGGUCCGgCUGGUua -5'
18989 5' -58.7 NC_004684.1 + 31396 0.66 0.531107
Target:  5'- --gGCUGGUCUGCCcGGUC-ACCGAg -3'
miRNA:   3'- cagCGGCUAGACGGuCCGGcUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 28167 0.66 0.527996
Target:  5'- gGUCGCgCGG-CgGCCcggccacaccgccgGGGCCGACCAc- -3'
miRNA:   3'- -CAGCG-GCUaGaCGG--------------UCCGGCUGGUua -5'
18989 5' -58.7 NC_004684.1 + 27999 0.66 0.55201
Target:  5'- uGUCGCCcagGAaCUcGCgCAGGCCgGGCCAAc -3'
miRNA:   3'- -CAGCGG---CUaGA-CG-GUCCGG-CUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 27264 0.67 0.480238
Target:  5'- aUCGCCGug--GCCAGGUCGccGCCGu- -3'
miRNA:   3'- cAGCGGCuagaCGGUCCGGC--UGGUua -5'
18989 5' -58.7 NC_004684.1 + 26461 0.67 0.500319
Target:  5'- -cCGCCGAcgUUGCCGGuGCCGuugcCCGAc -3'
miRNA:   3'- caGCGGCUa-GACGGUC-CGGCu---GGUUa -5'
18989 5' -58.7 NC_004684.1 + 25969 0.72 0.257096
Target:  5'- -cCGCUGAcguUCUGCCcGGCCuGGCCGAg -3'
miRNA:   3'- caGCGGCU---AGACGGuCCGG-CUGGUUa -5'
18989 5' -58.7 NC_004684.1 + 25189 0.66 0.55201
Target:  5'- gGUCGuuGAgcgacaugcCUGCCgggAGGUCGGCCAc- -3'
miRNA:   3'- -CAGCggCUa--------GACGG---UCCGGCUGGUua -5'
18989 5' -58.7 NC_004684.1 + 24539 0.67 0.489227
Target:  5'- -aCGgCGGUgUGCCGGGCCGcgauagcgucccgGCCAu- -3'
miRNA:   3'- caGCgGCUAgACGGUCCGGC-------------UGGUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.