miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18991 3' -55.6 NC_004684.1 + 33657 0.66 0.806628
Target:  5'- cCCuCGCCGGgcaUGGCGUcGCUGUgcaccaccaccgCGCUGg -3'
miRNA:   3'- -GGuGCGGCU---ACUGCAuUGACG------------GCGGC- -5'
18991 3' -55.6 NC_004684.1 + 22376 0.66 0.806628
Target:  5'- aCCGcCGCCGcgcgGGCcuUGGCcGCCGCCa -3'
miRNA:   3'- -GGU-GCGGCua--CUGc-AUUGaCGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 17612 0.66 0.806628
Target:  5'- aCCACGUCGuccGGCGUGGCa-CCGCg- -3'
miRNA:   3'- -GGUGCGGCua-CUGCAUUGacGGCGgc -5'
18991 3' -55.6 NC_004684.1 + 8725 0.66 0.806628
Target:  5'- gCgGCGCUGAUcccGAUGUuc--GCCGCCGc -3'
miRNA:   3'- -GgUGCGGCUA---CUGCAuugaCGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 40947 0.66 0.806628
Target:  5'- gCACGCCGcUG-CG--GCUGCCGUUc -3'
miRNA:   3'- gGUGCGGCuACuGCauUGACGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 22285 0.66 0.806628
Target:  5'- cCUGCGCCaguccGAaGGCGgucGCcGCCGCCGu -3'
miRNA:   3'- -GGUGCGG-----CUaCUGCau-UGaCGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 52167 0.66 0.806628
Target:  5'- ---gGCCGGUGGCauggAGCgggcguucaagGCCGCCGg -3'
miRNA:   3'- ggugCGGCUACUGca--UUGa----------CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 31400 0.66 0.805704
Target:  5'- uCCugGCUGGUcugcccggucaccGAgGUAcgGCgguaGCCGCCGa -3'
miRNA:   3'- -GGugCGGCUA-------------CUgCAU--UGa---CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 22324 0.66 0.797313
Target:  5'- gCGCGuuGAUcGCGcGGgUGCCGUCGc -3'
miRNA:   3'- gGUGCggCUAcUGCaUUgACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 50132 0.66 0.797313
Target:  5'- uCCugGCCug-GAgccaggcacCGgccacGCUGCCGCCGa -3'
miRNA:   3'- -GGugCGGcuaCU---------GCau---UGACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 1335 0.66 0.797313
Target:  5'- uCUggGCCGGggccgGGCGaccGACcagGCCGCCGa -3'
miRNA:   3'- -GGugCGGCUa----CUGCa--UUGa--CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 31852 0.66 0.797313
Target:  5'- uCgGgGUCGAUGGCGUAcaggccgacguACaggGCCGUCGg -3'
miRNA:   3'- -GgUgCGGCUACUGCAU-----------UGa--CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 9914 0.66 0.797313
Target:  5'- uCCGgGCUGAccgaGGCgGUGAUUGUgGCCGg -3'
miRNA:   3'- -GGUgCGGCUa---CUG-CAUUGACGgCGGC- -5'
18991 3' -55.6 NC_004684.1 + 59942 0.66 0.797313
Target:  5'- aCCugGCCGccGUGGCGgcguuCUGguUCGCCu -3'
miRNA:   3'- -GGugCGGC--UACUGCauu--GAC--GGCGGc -5'
18991 3' -55.6 NC_004684.1 + 11656 0.66 0.797313
Target:  5'- gCCACGCCagcacGGCGgccAACgUGaCCGCCGc -3'
miRNA:   3'- -GGUGCGGcua--CUGCa--UUG-AC-GGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 56025 0.66 0.787835
Target:  5'- aCCACGCUGcUGGCcaccaccgugGGCcuggagGCCGCCGu -3'
miRNA:   3'- -GGUGCGGCuACUGca--------UUGa-----CGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 29543 0.66 0.787835
Target:  5'- aCCAgGUCGAUGuCG-AACcgGUCGCCc -3'
miRNA:   3'- -GGUgCGGCUACuGCaUUGa-CGGCGGc -5'
18991 3' -55.6 NC_004684.1 + 32509 0.66 0.787835
Target:  5'- gCCACGCCc--GAgGUGccGCUGCUGuuGc -3'
miRNA:   3'- -GGUGCGGcuaCUgCAU--UGACGGCggC- -5'
18991 3' -55.6 NC_004684.1 + 43564 0.66 0.787835
Target:  5'- gCC-CGCCGc--ACcu-GCUGCCGCCGc -3'
miRNA:   3'- -GGuGCGGCuacUGcauUGACGGCGGC- -5'
18991 3' -55.6 NC_004684.1 + 65741 0.66 0.787835
Target:  5'- gCCACGaaguuggccUCGcgGGCGUug--GCCGCCGc -3'
miRNA:   3'- -GGUGC---------GGCuaCUGCAuugaCGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.