Results 1 - 20 of 152 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18992 | 5' | -55 | NC_004684.1 | + | 25403 | 0.65 | 0.817529 |
Target: 5'- --cAGCGGCGGCCa-GUACCAauGGGg -3' miRNA: 3'- gauUUGCCGCUGGcaCGUGGUggCUC- -5' |
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18992 | 5' | -55 | NC_004684.1 | + | 14800 | 0.65 | 0.817529 |
Target: 5'- ---uACGGCGGCgCGcUGU-CCACCGGa -3' miRNA: 3'- gauuUGCCGCUG-GC-ACGuGGUGGCUc -5' |
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18992 | 5' | -55 | NC_004684.1 | + | 2284 | 0.65 | 0.817528 |
Target: 5'- cCUcgGCGuaGUGGCCGUGCGgCACCu-- -3' miRNA: 3'- -GAuuUGC--CGCUGGCACGUgGUGGcuc -5' |
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18992 | 5' | -55 | NC_004684.1 | + | 35777 | 0.65 | 0.817528 |
Target: 5'- ---cAUGGUGACCG-GguCCGgCGAGa -3' miRNA: 3'- gauuUGCCGCUGGCaCguGGUgGCUC- -5' |
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18992 | 5' | -55 | NC_004684.1 | + | 30817 | 0.65 | 0.817528 |
Target: 5'- -cGGACGGCGAUgCGaUGC-CCGCCa-- -3' miRNA: 3'- gaUUUGCCGCUG-GC-ACGuGGUGGcuc -5' |
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18992 | 5' | -55 | NC_004684.1 | + | 60328 | 0.65 | 0.817528 |
Target: 5'- -----aGGUGGCCaccgccugcggGUGCACCuacaacGCCGAGg -3' miRNA: 3'- gauuugCCGCUGG-----------CACGUGG------UGGCUC- -5' |
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18992 | 5' | -55 | NC_004684.1 | + | 34219 | 0.65 | 0.817528 |
Target: 5'- -gAGGCGGCGAggaaCGUG-ACCGCCa-- -3' miRNA: 3'- gaUUUGCCGCUg---GCACgUGGUGGcuc -5' |
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18992 | 5' | -55 | NC_004684.1 | + | 35854 | 0.65 | 0.817528 |
Target: 5'- ---cGCGGCGcgcGCUGggucUGCACCACCa-- -3' miRNA: 3'- gauuUGCCGC---UGGC----ACGUGGUGGcuc -5' |
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18992 | 5' | -55 | NC_004684.1 | + | 61263 | 0.65 | 0.814783 |
Target: 5'- ---cAUGGCGGCgGUgucgggauucgacaGCugCGCCGGGu -3' miRNA: 3'- gauuUGCCGCUGgCA--------------CGugGUGGCUC- -5' |
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18992 | 5' | -55 | NC_004684.1 | + | 24930 | 0.65 | 0.814783 |
Target: 5'- gCUGGGCGGCGACCccgagaauuccucgGUGCcgACCcgGCCa-- -3' miRNA: 3'- -GAUUUGCCGCUGG--------------CACG--UGG--UGGcuc -5' |
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18992 | 5' | -55 | NC_004684.1 | + | 24344 | 0.66 | 0.812019 |
Target: 5'- -cGAGCuGGCGcaccucuuccuuggcACCGaGCagACCGCCGAGg -3' miRNA: 3'- gaUUUG-CCGC---------------UGGCaCG--UGGUGGCUC- -5' |
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18992 | 5' | -55 | NC_004684.1 | + | 21317 | 0.66 | 0.80831 |
Target: 5'- -gAGGCGGUGGuCCG-GCGCgACCGc- -3' miRNA: 3'- gaUUUGCCGCU-GGCaCGUGgUGGCuc -5' |
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18992 | 5' | -55 | NC_004684.1 | + | 6478 | 0.66 | 0.80831 |
Target: 5'- gCUGGGCGGCGGUgGUGUucgaCAUCGGGu -3' miRNA: 3'- -GAUUUGCCGCUGgCACGug--GUGGCUC- -5' |
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18992 | 5' | -55 | NC_004684.1 | + | 3624 | 0.66 | 0.80831 |
Target: 5'- ---cACGaGUGGCCGaagcGCGCCACCuGGGu -3' miRNA: 3'- gauuUGC-CGCUGGCa---CGUGGUGG-CUC- -5' |
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18992 | 5' | -55 | NC_004684.1 | + | 26580 | 0.66 | 0.798913 |
Target: 5'- --uGGCGcGCGGCgGUGUgcgcggguucGCCACCGGc -3' miRNA: 3'- gauUUGC-CGCUGgCACG----------UGGUGGCUc -5' |
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18992 | 5' | -55 | NC_004684.1 | + | 66862 | 0.66 | 0.798913 |
Target: 5'- -aGGGCGGCGaguaccgcGCCGaggucgccggggUGCugUACCGGGu -3' miRNA: 3'- gaUUUGCCGC--------UGGC------------ACGugGUGGCUC- -5' |
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18992 | 5' | -55 | NC_004684.1 | + | 42950 | 0.66 | 0.798913 |
Target: 5'- ---uGCGGCGGCCuGguugGCcCCACCGc- -3' miRNA: 3'- gauuUGCCGCUGG-Ca---CGuGGUGGCuc -5' |
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18992 | 5' | -55 | NC_004684.1 | + | 22146 | 0.66 | 0.798913 |
Target: 5'- ---cGCGGCauCCaugGCAUCACCGAGg -3' miRNA: 3'- gauuUGCCGcuGGca-CGUGGUGGCUC- -5' |
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18992 | 5' | -55 | NC_004684.1 | + | 13715 | 0.66 | 0.798913 |
Target: 5'- --cGGCGGCGAaCGUGCGCaggaACCa-- -3' miRNA: 3'- gauUUGCCGCUgGCACGUGg---UGGcuc -5' |
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18992 | 5' | -55 | NC_004684.1 | + | 63351 | 0.66 | 0.798913 |
Target: 5'- ----cCGGUGACCGcccaGCGC-ACCGAGc -3' miRNA: 3'- gauuuGCCGCUGGCa---CGUGgUGGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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