miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18998 3' -61.1 NC_004684.1 + 63038 0.66 0.472556
Target:  5'- cACCaUCGU-CGGCGCgCGCC-GCGCGc -3'
miRNA:   3'- uUGGcAGCAgGUCGCG-GUGGuCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 9951 0.66 0.472556
Target:  5'- --gCGUCGggaUCCGGCGgcagcUCACCGGCgGCGg -3'
miRNA:   3'- uugGCAGC---AGGUCGC-----GGUGGUCG-CGC- -5'
18998 3' -61.1 NC_004684.1 + 25111 0.66 0.462966
Target:  5'- uGCCGcC-UCCAGCuG-CACCGGCGCu -3'
miRNA:   3'- uUGGCaGcAGGUCG-CgGUGGUCGCGc -5'
18998 3' -61.1 NC_004684.1 + 26550 0.66 0.462966
Target:  5'- aGGCCGggguguacgCGuUCCGGCGCgCcCUGGCGCGc -3'
miRNA:   3'- -UUGGCa--------GC-AGGUCGCG-GuGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 7655 0.66 0.462966
Target:  5'- cAGCCG-Ca-CCAGCGCCACCcGGgGCc -3'
miRNA:   3'- -UUGGCaGcaGGUCGCGGUGG-UCgCGc -5'
18998 3' -61.1 NC_004684.1 + 63320 0.66 0.462966
Target:  5'- gGGCCGaCGcCCGGCaacgaGCCGCCGGUGg- -3'
miRNA:   3'- -UUGGCaGCaGGUCG-----CGGUGGUCGCgc -5'
18998 3' -61.1 NC_004684.1 + 7528 0.66 0.462013
Target:  5'- cAGCCaGUCGgcgaaacgggUCAGUGCCugguagcGCCAGCGCc -3'
miRNA:   3'- -UUGG-CAGCa---------GGUCGCGG-------UGGUCGCGc -5'
18998 3' -61.1 NC_004684.1 + 4505 0.66 0.462013
Target:  5'- cGCgCGUUGuUCCGGCgGCCaggacuuGCUGGCGCGa -3'
miRNA:   3'- uUG-GCAGC-AGGUCG-CGG-------UGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 41999 0.66 0.45348
Target:  5'- cGGCCacgauGUCGUCgCGGU-CgGCCAGCGCGu -3'
miRNA:   3'- -UUGG-----CAGCAG-GUCGcGgUGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 11007 0.66 0.45348
Target:  5'- -cCCGUCG-CUGGUGgguucaCCgACCAGCGCGa -3'
miRNA:   3'- uuGGCAGCaGGUCGC------GG-UGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 11641 0.66 0.45348
Target:  5'- uGACCGUCGgcaUCGGC-CaCGCCAGCacgGCGg -3'
miRNA:   3'- -UUGGCAGCa--GGUCGcG-GUGGUCG---CGC- -5'
18998 3' -61.1 NC_004684.1 + 468 0.66 0.452537
Target:  5'- gGGCCGUCgGUCuCGGCcaggucgcgcaugGCCAUCAGgGUGu -3'
miRNA:   3'- -UUGGCAG-CAG-GUCG-------------CGGUGGUCgCGC- -5'
18998 3' -61.1 NC_004684.1 + 58861 0.66 0.444101
Target:  5'- cACC-UCGUCCGGC-CCGCaCAGcCGCc -3'
miRNA:   3'- uUGGcAGCAGGUCGcGGUG-GUC-GCGc -5'
18998 3' -61.1 NC_004684.1 + 55961 0.66 0.444101
Target:  5'- cGCCG-CGcUCCAGCggGUCAUCGGCGUc -3'
miRNA:   3'- uUGGCaGC-AGGUCG--CGGUGGUCGCGc -5'
18998 3' -61.1 NC_004684.1 + 54500 0.66 0.444101
Target:  5'- cGCCGguaagcUCGUaCC-GCGCuCACCGGCGgGg -3'
miRNA:   3'- uUGGC------AGCA-GGuCGCG-GUGGUCGCgC- -5'
18998 3' -61.1 NC_004684.1 + 15926 0.66 0.444101
Target:  5'- cGugCGUCGguguggcgaugCCGcGCGCCACCgggucgcucGGCGUGg -3'
miRNA:   3'- -UugGCAGCa----------GGU-CGCGGUGG---------UCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 62090 0.66 0.444101
Target:  5'- -cCCGUCGcgaUUguGCGCgGCgGGUGCGg -3'
miRNA:   3'- uuGGCAGC---AGguCGCGgUGgUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 15873 0.66 0.444101
Target:  5'- uGCaCGUUG-CCGGUGUCGCCGcCGCGa -3'
miRNA:   3'- uUG-GCAGCaGGUCGCGGUGGUcGCGC- -5'
18998 3' -61.1 NC_004684.1 + 30792 0.66 0.444101
Target:  5'- cAUCGUUGgCguGC-CCACCGGCGUGa -3'
miRNA:   3'- uUGGCAGCaGguCGcGGUGGUCGCGC- -5'
18998 3' -61.1 NC_004684.1 + 57126 0.66 0.444101
Target:  5'- uGCCGUgGcCCAccGUGaCCgACCAGCGCa -3'
miRNA:   3'- uUGGCAgCaGGU--CGC-GG-UGGUCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.