miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19002 5' -52.5 NC_004684.1 + 48406 0.66 0.903423
Target:  5'- aCGGUGCccUGGACAGCgaACUGCUggUGCg -3'
miRNA:   3'- -GCCACGacAUUUGUUG--UGGCGG--ACGg -5'
19002 5' -52.5 NC_004684.1 + 36359 0.66 0.903423
Target:  5'- uGGUGUccaacGaAGGCAACGCCGUCUaCCu -3'
miRNA:   3'- gCCACGa----CaUUUGUUGUGGCGGAcGG- -5'
19002 5' -52.5 NC_004684.1 + 59168 0.66 0.903423
Target:  5'- uGGUGCcugcgaagGUGAGCAgguaGCGCuCGCC-GUCg -3'
miRNA:   3'- gCCACGa-------CAUUUGU----UGUG-GCGGaCGG- -5'
19002 5' -52.5 NC_004684.1 + 16111 0.66 0.903423
Target:  5'- uCGGaGCUG--GACGccuACGCCGCCaGCa -3'
miRNA:   3'- -GCCaCGACauUUGU---UGUGGCGGaCGg -5'
19002 5' -52.5 NC_004684.1 + 2616 0.66 0.903423
Target:  5'- aGGUGC-----GCAGCGuCCGCagUGCCg -3'
miRNA:   3'- gCCACGacauuUGUUGU-GGCGg-ACGG- -5'
19002 5' -52.5 NC_004684.1 + 30495 0.66 0.903423
Target:  5'- aGGUGUUGccacGGCAGCGCCGggaUGCg -3'
miRNA:   3'- gCCACGACau--UUGUUGUGGCgg-ACGg -5'
19002 5' -52.5 NC_004684.1 + 64596 0.66 0.902742
Target:  5'- uCGGUGCcugGUggcagccguuccaGAACGAggccacCACCGgCCUGCUc -3'
miRNA:   3'- -GCCACGa--CA-------------UUUGUU------GUGGC-GGACGG- -5'
19002 5' -52.5 NC_004684.1 + 65393 0.66 0.896491
Target:  5'- uGGUGCac--AGCGAgGCCGCC-GUCg -3'
miRNA:   3'- gCCACGacauUUGUUgUGGCGGaCGG- -5'
19002 5' -52.5 NC_004684.1 + 47331 0.66 0.896491
Target:  5'- cCGGUGUgggcGUcGAGCAugGCCaCCagGCCa -3'
miRNA:   3'- -GCCACGa---CA-UUUGUugUGGcGGa-CGG- -5'
19002 5' -52.5 NC_004684.1 + 52273 0.66 0.896491
Target:  5'- uGGcGUUGUGGA--ACACCaGCUUGCUg -3'
miRNA:   3'- gCCaCGACAUUUguUGUGG-CGGACGG- -5'
19002 5' -52.5 NC_004684.1 + 8621 0.66 0.896491
Target:  5'- cCGGUGCac----CGGCACCGCCgauCCu -3'
miRNA:   3'- -GCCACGacauuuGUUGUGGCGGac-GG- -5'
19002 5' -52.5 NC_004684.1 + 16414 0.66 0.896491
Target:  5'- aCGGUGCUGUu--CggUcuGCUGCC-GCUc -3'
miRNA:   3'- -GCCACGACAuuuGuuG--UGGCGGaCGG- -5'
19002 5' -52.5 NC_004684.1 + 60050 0.66 0.896491
Target:  5'- gGGUGCg----GCAcgaGCGCCGCCaGCa -3'
miRNA:   3'- gCCACGacauuUGU---UGUGGCGGaCGg -5'
19002 5' -52.5 NC_004684.1 + 22157 0.66 0.896491
Target:  5'- gCGGUGUcccgGUAGccaGACugUGCCUGgCg -3'
miRNA:   3'- -GCCACGa---CAUUug-UUGugGCGGACgG- -5'
19002 5' -52.5 NC_004684.1 + 18827 0.66 0.895783
Target:  5'- uCGGUGCUuaGGACGcCGCCacauccagcgagaGCgUGCCa -3'
miRNA:   3'- -GCCACGAcaUUUGUuGUGG-------------CGgACGG- -5'
19002 5' -52.5 NC_004684.1 + 12381 0.66 0.889289
Target:  5'- gCGGUGUUGUGucuGCGcucggugguGCACgGUC-GCCg -3'
miRNA:   3'- -GCCACGACAUu--UGU---------UGUGgCGGaCGG- -5'
19002 5' -52.5 NC_004684.1 + 41433 0.66 0.889289
Target:  5'- gCGGUGgUGc-GGCggUGCCGCCggUGUCa -3'
miRNA:   3'- -GCCACgACauUUGuuGUGGCGG--ACGG- -5'
19002 5' -52.5 NC_004684.1 + 33526 0.66 0.889289
Target:  5'- gCGGcuaUGCgggGUcguACGGCACCGuCCUGUUg -3'
miRNA:   3'- -GCC---ACGa--CAuu-UGUUGUGGC-GGACGG- -5'
19002 5' -52.5 NC_004684.1 + 36467 0.66 0.887077
Target:  5'- aGcGUGCcuggagGUAGACGGCGuuGCCuucguuggacaccaUGCCg -3'
miRNA:   3'- gC-CACGa-----CAUUUGUUGUggCGG--------------ACGG- -5'
19002 5' -52.5 NC_004684.1 + 15881 0.66 0.881822
Target:  5'- uGGUGgUGUGcACGuugccgguguCGCCGCCgcgauaggUGCCg -3'
miRNA:   3'- gCCACgACAUuUGUu---------GUGGCGG--------ACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.