miRNA display CGI


Results 1 - 20 of 302 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19005 3' -60.8 NC_004684.1 + 18284 0.66 0.555065
Target:  5'- cGCCugCUGG-CACCGACCggcaagaaggagcacAUcACCCu -3'
miRNA:   3'- -CGGugGGCCaGUGGCUGG---------------UGcUGGGc -5'
19005 3' -60.8 NC_004684.1 + 11462 0.66 0.551041
Target:  5'- gGCCucgcCCCGGUcCACCuuGGCCACcaGCuCCGg -3'
miRNA:   3'- -CGGu---GGGCCA-GUGG--CUGGUGc-UG-GGC- -5'
19005 3' -60.8 NC_004684.1 + 40338 0.66 0.551041
Target:  5'- cGgCGCUgggcaGGUCGCUGGCgGCGGCCUu -3'
miRNA:   3'- -CgGUGGg----CCAGUGGCUGgUGCUGGGc -5'
19005 3' -60.8 NC_004684.1 + 8253 0.66 0.551041
Target:  5'- gGCCAUCCuGuUCACCGACaa-GuCCCGc -3'
miRNA:   3'- -CGGUGGGcC-AGUGGCUGgugCuGGGC- -5'
19005 3' -60.8 NC_004684.1 + 8729 0.66 0.551041
Target:  5'- cGCUgauCCCGauguUCGCCG-CCGCG-CCCGg -3'
miRNA:   3'- -CGGu--GGGCc---AGUGGCuGGUGCuGGGC- -5'
19005 3' -60.8 NC_004684.1 + 41149 0.66 0.551041
Target:  5'- cCCGCCUGGaUgGCCGAcuCCAUGAUCgGc -3'
miRNA:   3'- cGGUGGGCC-AgUGGCU--GGUGCUGGgC- -5'
19005 3' -60.8 NC_004684.1 + 31489 0.66 0.551041
Target:  5'- uGCCggaGCCCacguaugcaGuGUCGggGACCACGGCCCGc -3'
miRNA:   3'- -CGG---UGGG---------C-CAGUggCUGGUGCUGGGC- -5'
19005 3' -60.8 NC_004684.1 + 63176 0.66 0.551041
Target:  5'- uGCgCGCCgGGUCgacucgACgCGGCCgaACGGCCCc -3'
miRNA:   3'- -CG-GUGGgCCAG------UG-GCUGG--UGCUGGGc -5'
19005 3' -60.8 NC_004684.1 + 24840 0.66 0.551041
Target:  5'- gGCCACgCCGaagccgaacgccGUCagcacGCCGACCACGGCg-- -3'
miRNA:   3'- -CGGUG-GGC------------CAG-----UGGCUGGUGCUGggc -5'
19005 3' -60.8 NC_004684.1 + 15765 0.66 0.551041
Target:  5'- -aCACCgaaaGGUgCGCCGAgCGCGGCCa- -3'
miRNA:   3'- cgGUGGg---CCA-GUGGCUgGUGCUGGgc -5'
19005 3' -60.8 NC_004684.1 + 58089 0.66 0.551041
Target:  5'- aGCUcgaCCGGgagcgCGCCGAgCAUGGCCgGg -3'
miRNA:   3'- -CGGug-GGCCa----GUGGCUgGUGCUGGgC- -5'
19005 3' -60.8 NC_004684.1 + 42103 0.66 0.551041
Target:  5'- cGCCGCCUGGUgugGCCGGaa--GGCCCu -3'
miRNA:   3'- -CGGUGGGCCAg--UGGCUggugCUGGGc -5'
19005 3' -60.8 NC_004684.1 + 39367 0.66 0.551041
Target:  5'- cGCuCugCCGGugUCACguccaGGCCAuCGACCUGc -3'
miRNA:   3'- -CG-GugGGCC--AGUGg----CUGGU-GCUGGGC- -5'
19005 3' -60.8 NC_004684.1 + 47946 0.66 0.551041
Target:  5'- cGCCGCCCGGgCAUgGGCgCACGGugguUUCGc -3'
miRNA:   3'- -CGGUGGGCCaGUGgCUG-GUGCU----GGGC- -5'
19005 3' -60.8 NC_004684.1 + 922 0.66 0.551041
Target:  5'- cGCCACCgGGUgGCgGcguggagacaacGCCGCcACCCu -3'
miRNA:   3'- -CGGUGGgCCAgUGgC------------UGGUGcUGGGc -5'
19005 3' -60.8 NC_004684.1 + 17769 0.66 0.550036
Target:  5'- aGCCGCUgGGcuggaCACCGGCCagccgcaACGACgCCu -3'
miRNA:   3'- -CGGUGGgCCa----GUGGCUGG-------UGCUG-GGc -5'
19005 3' -60.8 NC_004684.1 + 9258 0.66 0.548029
Target:  5'- cGCCAUgucgaucagCCGGUCGcguuguucgcggacCCGGCCAUG-CUCGg -3'
miRNA:   3'- -CGGUG---------GGCCAGU--------------GGCUGGUGCuGGGC- -5'
19005 3' -60.8 NC_004684.1 + 22119 0.66 0.54102
Target:  5'- gGCCGgaaaCCGGaCGCaagGGCCGCGACCa- -3'
miRNA:   3'- -CGGUg---GGCCaGUGg--CUGGUGCUGGgc -5'
19005 3' -60.8 NC_004684.1 + 14019 0.66 0.54102
Target:  5'- aUCACCUGGa-ACCGcauCCaggGCGACCCGa -3'
miRNA:   3'- cGGUGGGCCagUGGCu--GG---UGCUGGGC- -5'
19005 3' -60.8 NC_004684.1 + 48817 0.66 0.54102
Target:  5'- aGCCACCagcgCGGUC-UUGACCuCGGCCg- -3'
miRNA:   3'- -CGGUGG----GCCAGuGGCUGGuGCUGGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.