miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19006 5' -54.9 NC_004684.1 + 62723 0.66 0.80525
Target:  5'- aGCUGCaagGCAcgcAGGACggUGuACACCGa -3'
miRNA:   3'- aCGGCGga-UGU---UCCUGuaGC-UGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 58927 0.66 0.80525
Target:  5'- -cCCGCCUcCGGGGACAacagccaggccUUG-CGCCGg -3'
miRNA:   3'- acGGCGGAuGUUCCUGU-----------AGCuGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 24653 0.66 0.80525
Target:  5'- gGCCGCCaaccACGuccuGGACAugcuUC-ACACCGg -3'
miRNA:   3'- aCGGCGGa---UGUu---CCUGU----AGcUGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 21493 0.66 0.80525
Target:  5'- cGCCgGUCaagcAUGAGGACAaggcaccggccaUCGACACCa -3'
miRNA:   3'- aCGG-CGGa---UGUUCCUGU------------AGCUGUGGc -5'
19006 5' -54.9 NC_004684.1 + 18149 0.66 0.80525
Target:  5'- cGCCGCUgugGGGcGACGUgcCGACGCCc -3'
miRNA:   3'- aCGGCGGaugUUC-CUGUA--GCUGUGGc -5'
19006 5' -54.9 NC_004684.1 + 38240 0.66 0.80525
Target:  5'- cUGCUGCgCgGCGAacuGCGUCGGCACCa -3'
miRNA:   3'- -ACGGCG-GaUGUUcc-UGUAGCUGUGGc -5'
19006 5' -54.9 NC_004684.1 + 54280 0.66 0.80525
Target:  5'- cUGCCGCgCUgGCcgguGGGGCggCGuGCACCGc -3'
miRNA:   3'- -ACGGCG-GA-UGu---UCCUGuaGC-UGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 8712 0.66 0.80525
Target:  5'- aGCCGCaCggucgACGGGGAaCAUgGcCACCa -3'
miRNA:   3'- aCGGCG-Ga----UGUUCCU-GUAgCuGUGGc -5'
19006 5' -54.9 NC_004684.1 + 44528 0.66 0.804307
Target:  5'- gGCCGCCguggugGCccGGACGaacccggUCGGCagGCCGg -3'
miRNA:   3'- aCGGCGGa-----UGuuCCUGU-------AGCUG--UGGC- -5'
19006 5' -54.9 NC_004684.1 + 37790 0.66 0.795742
Target:  5'- cGCCGCUgccuAGGAaGUCGucuuCGCCGa -3'
miRNA:   3'- aCGGCGGauguUCCUgUAGCu---GUGGC- -5'
19006 5' -54.9 NC_004684.1 + 5576 0.66 0.795742
Target:  5'- -aCCGCCUGCAAGGcgacccgccuGCcgaCGGgGCCGa -3'
miRNA:   3'- acGGCGGAUGUUCC----------UGua-GCUgUGGC- -5'
19006 5' -54.9 NC_004684.1 + 49391 0.66 0.795742
Target:  5'- uUGCCGCCgUACucGGuCAgCGcCACCa -3'
miRNA:   3'- -ACGGCGG-AUGuuCCuGUaGCuGUGGc -5'
19006 5' -54.9 NC_004684.1 + 41552 0.66 0.795742
Target:  5'- gGCCGCCgaGCAucuGGcCGcCGAUGCCGu -3'
miRNA:   3'- aCGGCGGa-UGUu--CCuGUaGCUGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 31635 0.66 0.795742
Target:  5'- cGuCCGCgCUACAccauccccgccGGGACGcUGGCACUGu -3'
miRNA:   3'- aC-GGCG-GAUGU-----------UCCUGUaGCUGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 10326 0.66 0.795742
Target:  5'- cGCCGCaacGCAGGccgcCAUCGACcccGCCGg -3'
miRNA:   3'- aCGGCGga-UGUUCcu--GUAGCUG---UGGC- -5'
19006 5' -54.9 NC_004684.1 + 44319 0.66 0.795742
Target:  5'- uUGCCGCCgUugAAGG-CGUCaauGCGCuCGa -3'
miRNA:   3'- -ACGGCGG-AugUUCCuGUAGc--UGUG-GC- -5'
19006 5' -54.9 NC_004684.1 + 6009 0.66 0.794782
Target:  5'- cGCCaCCUGagaAAGGACAcaccaugUCGaACGCCa -3'
miRNA:   3'- aCGGcGGAUg--UUCCUGU-------AGC-UGUGGc -5'
19006 5' -54.9 NC_004684.1 + 26328 0.66 0.79382
Target:  5'- gGCCGCCgauugccgacgcggUGCGcucggccauuccgucGGGCAaCGGCACCGg -3'
miRNA:   3'- aCGGCGG--------------AUGUu--------------CCUGUaGCUGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 29006 0.66 0.786067
Target:  5'- cGCCGCCgguaGCGaucuuGGGAC-UgGugACCGc -3'
miRNA:   3'- aCGGCGGa---UGU-----UCCUGuAgCugUGGC- -5'
19006 5' -54.9 NC_004684.1 + 63080 0.66 0.786067
Target:  5'- gUGCCGCCgUGCAAGcacuACAUuacggCGAC-CCGg -3'
miRNA:   3'- -ACGGCGG-AUGUUCc---UGUA-----GCUGuGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.