miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19008 5' -63.6 NC_004684.1 + 60070 0.66 0.403521
Target:  5'- gCGGCCCGGcG-GCCCGuG-CGGgccuuCACCGg -3'
miRNA:   3'- gGCCGGGUC-CaCGGGC-CaGUC-----GUGGC- -5'
19008 5' -63.6 NC_004684.1 + 8618 0.66 0.403521
Target:  5'- --aGCCC-GGUGCaCCGGcaccgccgauccUCGGCACCc -3'
miRNA:   3'- ggcCGGGuCCACG-GGCC------------AGUCGUGGc -5'
19008 5' -63.6 NC_004684.1 + 45076 0.66 0.403521
Target:  5'- gCgGGCCaCGGGgaGCaUCGGgguUCGGCACCGc -3'
miRNA:   3'- -GgCCGG-GUCCa-CG-GGCC---AGUCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 26334 0.66 0.403521
Target:  5'- cUCGGUCCAGcUGCCuucguCGGUgUAGUGCCGu -3'
miRNA:   3'- -GGCCGGGUCcACGG-----GCCA-GUCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 66026 0.66 0.403521
Target:  5'- gUCGGCCaGGGUGUuggcgUUGGUCAGCcagACCc -3'
miRNA:   3'- -GGCCGGgUCCACG-----GGCCAGUCG---UGGc -5'
19008 5' -63.6 NC_004684.1 + 61557 0.66 0.403521
Target:  5'- uUGGUCCGGGUGC--GG-CAGCACUc -3'
miRNA:   3'- gGCCGGGUCCACGggCCaGUCGUGGc -5'
19008 5' -63.6 NC_004684.1 + 53103 0.66 0.400112
Target:  5'- aCUGGCCCGacucggcGGUG-UUGGUCAGCgugaagcuguugucGCCGg -3'
miRNA:   3'- -GGCCGGGU-------CCACgGGCCAGUCG--------------UGGC- -5'
19008 5' -63.6 NC_004684.1 + 24159 0.66 0.395033
Target:  5'- uCCGGUgCAGG-GUCCGcaggCGGUGCCGc -3'
miRNA:   3'- -GGCCGgGUCCaCGGGCca--GUCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 5949 0.66 0.395033
Target:  5'- gCGGUCCAaccuGGccGCgCCGGUgAGCgACCGg -3'
miRNA:   3'- gGCCGGGU----CCa-CG-GGCCAgUCG-UGGC- -5'
19008 5' -63.6 NC_004684.1 + 4174 0.66 0.395033
Target:  5'- aUGGCCC-GGUugcGCCCGGcgGGCGCgGu -3'
miRNA:   3'- gGCCGGGuCCA---CGGGCCagUCGUGgC- -5'
19008 5' -63.6 NC_004684.1 + 30961 0.66 0.395033
Target:  5'- aCUcGCUguGGaacgGCgUGGUCGGCACCGu -3'
miRNA:   3'- -GGcCGGguCCa---CGgGCCAGUCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 59839 0.66 0.395033
Target:  5'- gCCa-CCCGGG-G-CCGGUcCAGCACCGc -3'
miRNA:   3'- -GGccGGGUCCaCgGGCCA-GUCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 45393 0.66 0.39419
Target:  5'- aCCGGCCCcaugGCCUccuggaccgcgcgGGUCAGCucACCa -3'
miRNA:   3'- -GGCCGGGuccaCGGG-------------CCAGUCG--UGGc -5'
19008 5' -63.6 NC_004684.1 + 64548 0.66 0.392509
Target:  5'- gCGGCCUuGGUGaCCgGGUUGGUgcgcaggaucguguACCGg -3'
miRNA:   3'- gGCCGGGuCCAC-GGgCCAGUCG--------------UGGC- -5'
19008 5' -63.6 NC_004684.1 + 16216 0.66 0.38666
Target:  5'- gCGGUCCAuG-GCCCGGcgcaUCGGCcacACCGa -3'
miRNA:   3'- gGCCGGGUcCaCGGGCC----AGUCG---UGGC- -5'
19008 5' -63.6 NC_004684.1 + 23001 0.66 0.38666
Target:  5'- aCGGCCUGGGccgacugGCCgCcGUCGGCAgCGa -3'
miRNA:   3'- gGCCGGGUCCa------CGG-GcCAGUCGUgGC- -5'
19008 5' -63.6 NC_004684.1 + 7317 0.66 0.38666
Target:  5'- cCCGGCCauggccgacGcGUGCUCGGUguGCaacccGCCGg -3'
miRNA:   3'- -GGCCGGgu-------C-CACGGGCCAguCG-----UGGC- -5'
19008 5' -63.6 NC_004684.1 + 27023 0.66 0.38666
Target:  5'- gCCaGGCaCCGGGUG-CCGGU-GGCAUUGu -3'
miRNA:   3'- -GG-CCG-GGUCCACgGGCCAgUCGUGGC- -5'
19008 5' -63.6 NC_004684.1 + 5774 0.66 0.38666
Target:  5'- aCUGGCCCAaGUGCgUGGUguGCggGCgGg -3'
miRNA:   3'- -GGCCGGGUcCACGgGCCAguCG--UGgC- -5'
19008 5' -63.6 NC_004684.1 + 43272 0.66 0.38583
Target:  5'- aCGGCUgcugcguCGGcGUGCCgGGcugCGGCACCu -3'
miRNA:   3'- gGCCGG-------GUC-CACGGgCCa--GUCGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.