miRNA display CGI


Results 1 - 20 of 200 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19011 5' -58.3 NC_004684.1 + 14282 0.66 0.635735
Target:  5'- cGCUGAccaACACCGCCGaguCgGGCCa-- -3'
miRNA:   3'- uCGGCU---UGUGGCGGCau-GgCUGGcua -5'
19011 5' -58.3 NC_004684.1 + 39502 0.66 0.635735
Target:  5'- aGGCCGGGCcaACUGUCGUcguagccgagcAgCGACCGGc -3'
miRNA:   3'- -UCGGCUUG--UGGCGGCA-----------UgGCUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 34721 0.66 0.635735
Target:  5'- aGGCCGuAGCcauGCCGCCGccaggccuUGCCaACCGGc -3'
miRNA:   3'- -UCGGC-UUG---UGGCGGC--------AUGGcUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 55527 0.66 0.635735
Target:  5'- cGCC-AGCGCCGCCacgaguucGUACCcguuGCCGAa -3'
miRNA:   3'- uCGGcUUGUGGCGG--------CAUGGc---UGGCUa -5'
19011 5' -58.3 NC_004684.1 + 55297 0.66 0.635735
Target:  5'- uGCgUGAugGCCGCCGcGCgGGCCa-- -3'
miRNA:   3'- uCG-GCUugUGGCGGCaUGgCUGGcua -5'
19011 5' -58.3 NC_004684.1 + 25933 0.66 0.635735
Target:  5'- cGCCGAACAUCGgCaaaagGUGCCcaacGCCGAg -3'
miRNA:   3'- uCGGCUUGUGGCgG-----CAUGGc---UGGCUa -5'
19011 5' -58.3 NC_004684.1 + 56460 0.66 0.634671
Target:  5'- cGGCUGAGCAUgCGcCCGUcgcugguggguucACCGACCa-- -3'
miRNA:   3'- -UCGGCUUGUG-GC-GGCA-------------UGGCUGGcua -5'
19011 5' -58.3 NC_004684.1 + 62185 0.66 0.625101
Target:  5'- cGGCCGAugauggcgaacACGuuGCCGUcCUGGCCa-- -3'
miRNA:   3'- -UCGGCU-----------UGUggCGGCAuGGCUGGcua -5'
19011 5' -58.3 NC_004684.1 + 41347 0.66 0.625101
Target:  5'- cGGCCGGGCcaagGCCacCCGguucAUCGACCGAUu -3'
miRNA:   3'- -UCGGCUUG----UGGc-GGCa---UGGCUGGCUA- -5'
19011 5' -58.3 NC_004684.1 + 29436 0.66 0.625101
Target:  5'- cGcCCGGAC-CCGCUGgg-CGACCGGUu -3'
miRNA:   3'- uC-GGCUUGuGGCGGCaugGCUGGCUA- -5'
19011 5' -58.3 NC_004684.1 + 37183 0.66 0.625101
Target:  5'- cGCCGAGCAUCGaCGcGCgCGGCCa-- -3'
miRNA:   3'- uCGGCUUGUGGCgGCaUG-GCUGGcua -5'
19011 5' -58.3 NC_004684.1 + 7242 0.66 0.625101
Target:  5'- cGCCGAGCAaauCCGCUacGCC-ACCGAg -3'
miRNA:   3'- uCGGCUUGU---GGCGGcaUGGcUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 10367 0.66 0.625101
Target:  5'- uGCgCGAgaucgcgcGCACCGCCGggUACCaGGCCGc- -3'
miRNA:   3'- uCG-GCU--------UGUGGCGGC--AUGG-CUGGCua -5'
19011 5' -58.3 NC_004684.1 + 34227 0.66 0.625101
Target:  5'- uGUgGGACACCGCCGgGCCaACgGGc -3'
miRNA:   3'- uCGgCUUGUGGCGGCaUGGcUGgCUa -5'
19011 5' -58.3 NC_004684.1 + 4161 0.66 0.625101
Target:  5'- gGGCCGAcgcccggcaACgaGCCGCCGg--UGGCCGAg -3'
miRNA:   3'- -UCGGCU---------UG--UGGCGGCaugGCUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 10890 0.66 0.625101
Target:  5'- cGCCGGugACCacccgggucgGCgCGUACaGGCCGAg -3'
miRNA:   3'- uCGGCUugUGG----------CG-GCAUGgCUGGCUa -5'
19011 5' -58.3 NC_004684.1 + 20455 0.66 0.625101
Target:  5'- -cCCGAacgggucacccACACCGCCGU--UGGCCGGUc -3'
miRNA:   3'- ucGGCU-----------UGUGGCGGCAugGCUGGCUA- -5'
19011 5' -58.3 NC_004684.1 + 65260 0.66 0.625101
Target:  5'- cGCCGAACGCaCGCagGUccagcuCCGACCa-- -3'
miRNA:   3'- uCGGCUUGUG-GCGg-CAu-----GGCUGGcua -5'
19011 5' -58.3 NC_004684.1 + 58765 0.66 0.625101
Target:  5'- uGCCGAGgAUCgGCgGUGCCGgugcACCGGg -3'
miRNA:   3'- uCGGCUUgUGG-CGgCAUGGC----UGGCUa -5'
19011 5' -58.3 NC_004684.1 + 31724 0.66 0.624037
Target:  5'- cGCCGGuggcgacACACCGCC--GCCGACgGc- -3'
miRNA:   3'- uCGGCU-------UGUGGCGGcaUGGCUGgCua -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.