Results 1 - 20 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19013 | 5' | -63.7 | NC_004684.1 | + | 43674 | 0.66 | 0.378754 |
Target: 5'- cUCAGCCCacacggcgucgaGGUCcGaCACCGCCuGGGcAGCu -3' miRNA: 3'- -GGUCGGG------------CCGGaC-GUGGCGG-CCC-UUG- -5' |
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19013 | 5' | -63.7 | NC_004684.1 | + | 43616 | 0.66 | 0.378754 |
Target: 5'- aCAGCCCGGCCacgGUgugGCCGagcgCGGuGAGu -3' miRNA: 3'- gGUCGGGCCGGa--CG---UGGCg---GCC-CUUg -5' |
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19013 | 5' | -63.7 | NC_004684.1 | + | 65663 | 0.66 | 0.378754 |
Target: 5'- cCCGGUCCcgaguaGGCCUGCGCCaGCa-GGcGCu -3' miRNA: 3'- -GGUCGGG------CCGGACGUGG-CGgcCCuUG- -5' |
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19013 | 5' | -63.7 | NC_004684.1 | + | 330 | 0.66 | 0.378754 |
Target: 5'- aUCAGCUCGGUgU-UACCgcGCCGGGggUu -3' miRNA: 3'- -GGUCGGGCCGgAcGUGG--CGGCCCuuG- -5' |
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19013 | 5' | -63.7 | NC_004684.1 | + | 59990 | 0.66 | 0.378754 |
Target: 5'- -aGGgCCGGUUcgUGCGCCGCCGcaucGGggUg -3' miRNA: 3'- ggUCgGGCCGG--ACGUGGCGGC----CCuuG- -5' |
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19013 | 5' | -63.7 | NC_004684.1 | + | 15720 | 0.66 | 0.378754 |
Target: 5'- uCCAGCaacCCGGCCUcGCGCgCGUugccuuCGGGcACc -3' miRNA: 3'- -GGUCG---GGCCGGA-CGUG-GCG------GCCCuUG- -5' |
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19013 | 5' | -63.7 | NC_004684.1 | + | 26047 | 0.66 | 0.378754 |
Target: 5'- aCCAGCuuGGCCaGCucGgCGuuGGGcACc -3' miRNA: 3'- -GGUCGggCCGGaCG--UgGCggCCCuUG- -5' |
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19013 | 5' | -63.7 | NC_004684.1 | + | 6107 | 0.66 | 0.376283 |
Target: 5'- gCGGCCUaaaGGCCaccgcguccgauggUGCGCCugagccagGCCGGGAc- -3' miRNA: 3'- gGUCGGG---CCGG--------------ACGUGG--------CGGCCCUug -5' |
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19013 | 5' | -63.7 | NC_004684.1 | + | 25892 | 0.66 | 0.373823 |
Target: 5'- gCCA-CCCGGCCaguugGUgacgaacaccggcguGCCGCCGguGGAGCc -3' miRNA: 3'- -GGUcGGGCCGGa----CG---------------UGGCGGC--CCUUG- -5' |
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19013 | 5' | -63.7 | NC_004684.1 | + | 18643 | 0.66 | 0.373823 |
Target: 5'- aCCucuGCCCGGugacgacgugaccauCgUGcCGCCGCUGGGcGCg -3' miRNA: 3'- -GGu--CGGGCC---------------GgAC-GUGGCGGCCCuUG- -5' |
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19013 | 5' | -63.7 | NC_004684.1 | + | 2522 | 0.66 | 0.370559 |
Target: 5'- --cGCCCGGCaCUGCGgaCGCUGcggcaccugcguGGAGCg -3' miRNA: 3'- gguCGGGCCG-GACGUg-GCGGC------------CCUUG- -5' |
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19013 | 5' | -63.7 | NC_004684.1 | + | 43395 | 0.66 | 0.370559 |
Target: 5'- aCGGCCCGGagaaCggGuCGCCGCCGccGAACc -3' miRNA: 3'- gGUCGGGCCg---Ga-C-GUGGCGGCc-CUUG- -5' |
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19013 | 5' | -63.7 | NC_004684.1 | + | 3481 | 0.66 | 0.370559 |
Target: 5'- gCCAcGCCgGGCC-GCACCgugGCCGccaGGACg -3' miRNA: 3'- -GGU-CGGgCCGGaCGUGG---CGGCc--CUUG- -5' |
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19013 | 5' | -63.7 | NC_004684.1 | + | 19927 | 0.66 | 0.370559 |
Target: 5'- gCGGCaaCCGGCaUGCGCCGCCGuc-ACa -3' miRNA: 3'- gGUCG--GGCCGgACGUGGCGGCccuUG- -5' |
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19013 | 5' | -63.7 | NC_004684.1 | + | 19461 | 0.66 | 0.369747 |
Target: 5'- aCAGCgguguccUCGGCCauguUGCGCCGCUGGaucAGCg -3' miRNA: 3'- gGUCG-------GGCCGG----ACGUGGCGGCCc--UUG- -5' |
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19013 | 5' | -63.7 | NC_004684.1 | + | 50120 | 0.66 | 0.362487 |
Target: 5'- gCCAgGCaCCGGCCacGCuGCCGCCGacGGuGCg -3' miRNA: 3'- -GGU-CG-GGCCGGa-CG-UGGCGGC--CCuUG- -5' |
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19013 | 5' | -63.7 | NC_004684.1 | + | 12937 | 0.66 | 0.362487 |
Target: 5'- gCGGCCuCGGCCUccGCGaccaCGUCGGcAGCa -3' miRNA: 3'- gGUCGG-GCCGGA--CGUg---GCGGCCcUUG- -5' |
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19013 | 5' | -63.7 | NC_004684.1 | + | 63495 | 0.66 | 0.362487 |
Target: 5'- uCCAGCUgcGCCUGCGCCaGCaGGGcGGCc -3' miRNA: 3'- -GGUCGGgcCGGACGUGG-CGgCCC-UUG- -5' |
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19013 | 5' | -63.7 | NC_004684.1 | + | 42757 | 0.66 | 0.362487 |
Target: 5'- gCGGCCUGGCCggUGCGauCC-CCGGuuuGAGCg -3' miRNA: 3'- gGUCGGGCCGG--ACGU--GGcGGCC---CUUG- -5' |
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19013 | 5' | -63.7 | NC_004684.1 | + | 40477 | 0.66 | 0.362487 |
Target: 5'- aCCGGCCUgccgaaGGCC-GcCACCGCCGaGGc-- -3' miRNA: 3'- -GGUCGGG------CCGGaC-GUGGCGGC-CCuug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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