miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19014 3' -59.2 NC_004684.1 + 38739 0.66 0.556879
Target:  5'- uCACCGCCGUcucgcGGCACCGgaaCGGGu -3'
miRNA:   3'- uGUGGCGGCAucua-CCGUGGCg--GCUU- -5'
19014 3' -59.2 NC_004684.1 + 54346 0.66 0.556879
Target:  5'- aGCGCgGCgGUGGAgauguUGGCAagUGCCGGGg -3'
miRNA:   3'- -UGUGgCGgCAUCU-----ACCGUg-GCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 40101 0.66 0.556879
Target:  5'- -gGCCgaucucgugGCCGUAGcgGGCGCUGgCGGc -3'
miRNA:   3'- ugUGG---------CGGCAUCuaCCGUGGCgGCUu -5'
19014 3' -59.2 NC_004684.1 + 34486 0.66 0.546425
Target:  5'- gGCACCGCCGaGGA---CACCcCCGAAa -3'
miRNA:   3'- -UGUGGCGGCaUCUaccGUGGcGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 8567 0.66 0.546425
Target:  5'- -uGCCGCaCG-AGAUGaGC-CUGCCGAGc -3'
miRNA:   3'- ugUGGCG-GCaUCUAC-CGuGGCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 8675 0.66 0.546425
Target:  5'- -aGCUGCUGUuccAGGUGGCgcagACCGCCu-- -3'
miRNA:   3'- ugUGGCGGCA---UCUACCG----UGGCGGcuu -5'
19014 3' -59.2 NC_004684.1 + 41284 0.66 0.546425
Target:  5'- gACAgCGCCG-AGGUguuggagaucaGGCgACCGCUGGAg -3'
miRNA:   3'- -UGUgGCGGCaUCUA-----------CCG-UGGCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 63589 0.66 0.536033
Target:  5'- uGCGCgGCgCGgcGGUGGuUACCGCCu-- -3'
miRNA:   3'- -UGUGgCG-GCauCUACC-GUGGCGGcuu -5'
19014 3' -59.2 NC_004684.1 + 42225 0.66 0.536033
Target:  5'- -gGCCGCCGgugucGGCACCgGCgCGAAg -3'
miRNA:   3'- ugUGGCGGCaucuaCCGUGG-CG-GCUU- -5'
19014 3' -59.2 NC_004684.1 + 31088 0.66 0.536033
Target:  5'- -uGCCGCCGaGGGcUGGCAggaCGCCGc- -3'
miRNA:   3'- ugUGGCGGCaUCU-ACCGUg--GCGGCuu -5'
19014 3' -59.2 NC_004684.1 + 60234 0.66 0.536033
Target:  5'- uGCGCgGCUGUucGGUGGCggucACUGCUGGAc -3'
miRNA:   3'- -UGUGgCGGCAu-CUACCG----UGGCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 12612 0.66 0.536033
Target:  5'- cACGCCGCgCaccuuGcgGGCACCGgCGAGg -3'
miRNA:   3'- -UGUGGCG-Gcau--CuaCCGUGGCgGCUU- -5'
19014 3' -59.2 NC_004684.1 + 66382 0.66 0.534997
Target:  5'- aGCugCGCgGUGGAaaucuccgcaccuUGGUGCUugGCCGAGa -3'
miRNA:   3'- -UGugGCGgCAUCU-------------ACCGUGG--CGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 57901 0.66 0.534997
Target:  5'- -gGCCggGCUGaAGGUGGCcgggcugACCGCCGAu -3'
miRNA:   3'- ugUGG--CGGCaUCUACCG-------UGGCGGCUu -5'
19014 3' -59.2 NC_004684.1 + 751 0.66 0.525711
Target:  5'- gACGCC-CUGgcGGcgcuccUGGaCACCGCCGAGg -3'
miRNA:   3'- -UGUGGcGGCauCU------ACC-GUGGCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 18210 0.66 0.525711
Target:  5'- -gGCCGCCGccGccGcCGCCGCCGAGa -3'
miRNA:   3'- ugUGGCGGCauCuaCcGUGGCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 41621 0.66 0.525711
Target:  5'- -uGCCGCCgGUGGAgccGGaCGCCagGCCGGGg -3'
miRNA:   3'- ugUGGCGG-CAUCUa--CC-GUGG--CGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 47057 0.66 0.524683
Target:  5'- uGCACCgggcgacGCCGaucucGAUGGcCGCCGCCGc- -3'
miRNA:   3'- -UGUGG-------CGGCau---CUACC-GUGGCGGCuu -5'
19014 3' -59.2 NC_004684.1 + 10348 0.66 0.516486
Target:  5'- gACcCCGCCGgggaggacaugcgcgAGAUcgcGcGCACCGCCGGGu -3'
miRNA:   3'- -UGuGGCGGCa--------------UCUA---C-CGUGGCGGCUU- -5'
19014 3' -59.2 NC_004684.1 + 50648 0.66 0.515465
Target:  5'- gACACCGCCGUcggGGGUGcggaccaggcguGCGCCcgguGCCGu- -3'
miRNA:   3'- -UGUGGCGGCA---UCUAC------------CGUGG----CGGCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.