miRNA display CGI


Results 1 - 20 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19015 3' -62.6 NC_004684.1 + 31456 0.66 0.427479
Target:  5'- -aGCCGCCCguagagcagguccucGGCGCGagccucuUUGCGGUc -3'
miRNA:   3'- agCGGCGGG---------------UCGCGCgacu---AGCGCCG- -5'
19015 3' -62.6 NC_004684.1 + 18709 0.66 0.423901
Target:  5'- gUCGCUGaCCGGUGgcacgcucuCGCUGGaUGUGGCg -3'
miRNA:   3'- -AGCGGCgGGUCGC---------GCGACUaGCGCCG- -5'
19015 3' -62.6 NC_004684.1 + 58734 0.66 0.423901
Target:  5'- -gGCCGCaCCgGGCaCGCaUGAUCGCGuuGCc -3'
miRNA:   3'- agCGGCG-GG-UCGcGCG-ACUAGCGC--CG- -5'
19015 3' -62.6 NC_004684.1 + 16030 0.66 0.423901
Target:  5'- gUCGUugacgUGCCCGGCGaCGaCgacAUCGUGGCc -3'
miRNA:   3'- -AGCG-----GCGGGUCGC-GC-Gac-UAGCGCCG- -5'
19015 3' -62.6 NC_004684.1 + 12235 0.66 0.423901
Target:  5'- gUGCCGCCCgacGGCG-GC-GAUC-CGGUc -3'
miRNA:   3'- aGCGGCGGG---UCGCgCGaCUAGcGCCG- -5'
19015 3' -62.6 NC_004684.1 + 26837 0.66 0.423901
Target:  5'- -gGCuuCGCCCAGCuccUGgaGGUCGCGGa -3'
miRNA:   3'- agCG--GCGGGUCGc--GCgaCUAGCGCCg -5'
19015 3' -62.6 NC_004684.1 + 10268 0.66 0.423901
Target:  5'- -aGCCGCgCCAGUGCuGCcagcGGUCGCuccaGGUc -3'
miRNA:   3'- agCGGCG-GGUCGCG-CGa---CUAGCG----CCG- -5'
19015 3' -62.6 NC_004684.1 + 43630 0.66 0.423901
Target:  5'- gUGUgGCCgAGCGCGgUGAguUCGuCGGa -3'
miRNA:   3'- aGCGgCGGgUCGCGCgACU--AGC-GCCg -5'
19015 3' -62.6 NC_004684.1 + 45908 0.66 0.423901
Target:  5'- cUGCUugaCCGGCGCGUUGAacaccUCGuCGGUg -3'
miRNA:   3'- aGCGGcg-GGUCGCGCGACU-----AGC-GCCG- -5'
19015 3' -62.6 NC_004684.1 + 57124 0.66 0.423901
Target:  5'- cCGCUggcaGCaCUGGCGCgGCUGGUUcgccuccaugGCGGCg -3'
miRNA:   3'- aGCGG----CG-GGUCGCG-CGACUAG----------CGCCG- -5'
19015 3' -62.6 NC_004684.1 + 55701 0.66 0.423901
Target:  5'- gUUGUCGUaguGCGCaGCUGcuugCGCGGCg -3'
miRNA:   3'- -AGCGGCGgguCGCG-CGACua--GCGCCG- -5'
19015 3' -62.6 NC_004684.1 + 50380 0.66 0.423901
Target:  5'- aC-CCGCUCGGUGCGCauGUCgGCGGg -3'
miRNA:   3'- aGcGGCGGGUCGCGCGacUAG-CGCCg -5'
19015 3' -62.6 NC_004684.1 + 54601 0.66 0.422119
Target:  5'- aUCGCgCGCgCguGCGCGCguacgugugCGCGcGCg -3'
miRNA:   3'- -AGCG-GCG-GguCGCGCGacua-----GCGC-CG- -5'
19015 3' -62.6 NC_004684.1 + 63458 0.66 0.421229
Target:  5'- uUCGCCGCCCAGUuccggcauucggggGCGC-GAggccuccaGCuGCg -3'
miRNA:   3'- -AGCGGCGGGUCG--------------CGCGaCUag------CGcCG- -5'
19015 3' -62.6 NC_004684.1 + 27053 0.66 0.415035
Target:  5'- cCGCCagcgaccuGCCCAGCGC-CgaGGUCGUgccugccgGGCg -3'
miRNA:   3'- aGCGG--------CGGGUCGCGcGa-CUAGCG--------CCG- -5'
19015 3' -62.6 NC_004684.1 + 49872 0.66 0.415035
Target:  5'- aCGUCGUCCGGCGUggcaccGCgc-UCGCGaGCu -3'
miRNA:   3'- aGCGGCGGGUCGCG------CGacuAGCGC-CG- -5'
19015 3' -62.6 NC_004684.1 + 40063 0.66 0.415035
Target:  5'- cUCGUCGUuggUCAGCGUGC-GGUCgcagauaccgcaGCGGCc -3'
miRNA:   3'- -AGCGGCG---GGUCGCGCGaCUAG------------CGCCG- -5'
19015 3' -62.6 NC_004684.1 + 41253 0.66 0.415035
Target:  5'- cUGCgCGgCCAGCGagguGCUGGU-GCGGUc -3'
miRNA:   3'- aGCG-GCgGGUCGCg---CGACUAgCGCCG- -5'
19015 3' -62.6 NC_004684.1 + 22539 0.66 0.415035
Target:  5'- cUCGCUcuGCCCGGUGUGU---UCGcCGGUa -3'
miRNA:   3'- -AGCGG--CGGGUCGCGCGacuAGC-GCCG- -5'
19015 3' -62.6 NC_004684.1 + 13108 0.66 0.415035
Target:  5'- aCGCCGCCCcacCG-GCcag-CGCGGCa -3'
miRNA:   3'- aGCGGCGGGuc-GCgCGacuaGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.