miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19015 5' -57.2 NC_004684.1 + 14093 0.66 0.669074
Target:  5'- gGGUgACcgGGUGGUGUGGCUcagccccggugGGUGGGa -3'
miRNA:   3'- aUCGgUG--CUACCGCGCCGAa----------CUACCC- -5'
19015 5' -57.2 NC_004684.1 + 11842 0.66 0.669074
Target:  5'- gGGCCACGgcGGCcaGCGGCgcGAguucgUGGu -3'
miRNA:   3'- aUCGGUGCuaCCG--CGCCGaaCU-----ACCc -5'
19015 5' -57.2 NC_004684.1 + 63584 0.66 0.669074
Target:  5'- cGGCCuGCGc-GGCGCGGC--GGUGGu -3'
miRNA:   3'- aUCGG-UGCuaCCGCGCCGaaCUACCc -5'
19015 5' -57.2 NC_004684.1 + 47944 0.66 0.669074
Target:  5'- aGGCCuuGGUGGCGuCGGCacGGcUGGcGg -3'
miRNA:   3'- aUCGGugCUACCGC-GCCGaaCU-ACC-C- -5'
19015 5' -57.2 NC_004684.1 + 43566 0.66 0.669074
Target:  5'- cGGCCAUGAUGGUGUuacucCUUaaacGGUGGGu -3'
miRNA:   3'- aUCGGUGCUACCGCGcc---GAA----CUACCC- -5'
19015 5' -57.2 NC_004684.1 + 7570 0.66 0.669074
Target:  5'- gGGUgGCGcUGGUGCGGCU-GGUGc- -3'
miRNA:   3'- aUCGgUGCuACCGCGCCGAaCUACcc -5'
19015 5' -57.2 NC_004684.1 + 19723 0.66 0.658315
Target:  5'- cGGCCAcuCGGUGaGCGCGGCacc-UGGa -3'
miRNA:   3'- aUCGGU--GCUAC-CGCGCCGaacuACCc -5'
19015 5' -57.2 NC_004684.1 + 65342 0.66 0.658315
Target:  5'- aGGCCACGAUGGCGgcccccagGGCcaccaGGGc -3'
miRNA:   3'- aUCGGUGCUACCGCg-------CCGaacuaCCC- -5'
19015 5' -57.2 NC_004684.1 + 4179 0.66 0.647532
Target:  5'- gAGCCGcCGGUGGC-CGaGaa-GAUGGGg -3'
miRNA:   3'- aUCGGU-GCUACCGcGC-CgaaCUACCC- -5'
19015 5' -57.2 NC_004684.1 + 8890 0.66 0.647532
Target:  5'- cUGGaCCGCaGUcGGCGCGGCaaGAaGGGc -3'
miRNA:   3'- -AUC-GGUGcUA-CCGCGCCGaaCUaCCC- -5'
19015 5' -57.2 NC_004684.1 + 36000 0.66 0.636736
Target:  5'- uUGGCCugGuUGGCGa-GCgUGAUGGu -3'
miRNA:   3'- -AUCGGugCuACCGCgcCGaACUACCc -5'
19015 5' -57.2 NC_004684.1 + 33482 0.66 0.625936
Target:  5'- cGGCUGCGGUGGaCGCGGCggc--GGc -3'
miRNA:   3'- aUCGGUGCUACC-GCGCCGaacuaCCc -5'
19015 5' -57.2 NC_004684.1 + 54389 0.66 0.625936
Target:  5'- aGGCCAUGcgGGCaaguguagaccgGCGGUguuGUGGGu -3'
miRNA:   3'- aUCGGUGCuaCCG------------CGCCGaacUACCC- -5'
19015 5' -57.2 NC_004684.1 + 16190 0.66 0.625936
Target:  5'- cUGGCCACGAUGuacggccagggcGCGCGGUcc-AUGGc -3'
miRNA:   3'- -AUCGGUGCUAC------------CGCGCCGaacUACCc -5'
19015 5' -57.2 NC_004684.1 + 1101 0.66 0.615142
Target:  5'- aGGCCGCGAcccGGCGCaacuGGCacgaGAUGGu -3'
miRNA:   3'- aUCGGUGCUa--CCGCG----CCGaa--CUACCc -5'
19015 5' -57.2 NC_004684.1 + 65354 0.66 0.614063
Target:  5'- gUAGuCCACGAacagGGCGCuGGCcUGGUcaacgucGGGg -3'
miRNA:   3'- -AUC-GGUGCUa---CCGCG-CCGaACUA-------CCC- -5'
19015 5' -57.2 NC_004684.1 + 28089 0.66 0.614063
Target:  5'- -cGCCGCGcgacccgcaccggGUGGUGCGGUUcgaggccuugcUGGUGGc -3'
miRNA:   3'- auCGGUGC-------------UACCGCGCCGA-----------ACUACCc -5'
19015 5' -57.2 NC_004684.1 + 32757 0.67 0.604361
Target:  5'- cGGCCGaccUGGUGGCGUGaGCaUGAccGGGu -3'
miRNA:   3'- aUCGGU---GCUACCGCGC-CGaACUa-CCC- -5'
19015 5' -57.2 NC_004684.1 + 62754 0.67 0.604361
Target:  5'- aGGCCAUGGUGGacuugcccuccUGCGGCgggcaggUGAUGa- -3'
miRNA:   3'- aUCGGUGCUACC-----------GCGCCGa------ACUACcc -5'
19015 5' -57.2 NC_004684.1 + 40710 0.67 0.603284
Target:  5'- gGGCgGCGGUGGCcgggacgaccagcGCGGCg----GGGg -3'
miRNA:   3'- aUCGgUGCUACCG-------------CGCCGaacuaCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.