miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19021 3' -65.2 NC_004684.1 + 9808 0.66 0.327706
Target:  5'- -cCACCGUCGGuagguugcgggcgauGUCGGCCaACCGGCGc -3'
miRNA:   3'- guGUGGCGGCCc--------------CGGCUGG-UGGCCGU- -5'
19021 3' -65.2 NC_004684.1 + 54793 0.66 0.32697
Target:  5'- aGCGCgCGCCaGGaGCCGAUgACCcuGGCu -3'
miRNA:   3'- gUGUG-GCGGcCC-CGGCUGgUGG--CCGu -5'
19021 3' -65.2 NC_004684.1 + 34143 0.66 0.32697
Target:  5'- -uCGCCGCCucgGGcGGCaCGGugcugcUCACCGGCAc -3'
miRNA:   3'- guGUGGCGG---CC-CCG-GCU------GGUGGCCGU- -5'
19021 3' -65.2 NC_004684.1 + 53285 0.66 0.32697
Target:  5'- cCAC-CCaCCGGGGCUGAgCCAcaccacCCGGUc -3'
miRNA:   3'- -GUGuGGcGGCCCCGGCU-GGU------GGCCGu -5'
19021 3' -65.2 NC_004684.1 + 1485 0.66 0.32697
Target:  5'- aCGCGCCGgaGGuGGCCcgccuguugcgcGACCACuaCGGCGu -3'
miRNA:   3'- -GUGUGGCggCC-CCGG------------CUGGUG--GCCGU- -5'
19021 3' -65.2 NC_004684.1 + 61684 0.66 0.32697
Target:  5'- gCACGCCauuggcgucgguGCCGuGGGCaGGCCGggccCCGGCc -3'
miRNA:   3'- -GUGUGG------------CGGC-CCCGgCUGGU----GGCCGu -5'
19021 3' -65.2 NC_004684.1 + 17904 0.66 0.32697
Target:  5'- aCGCGCCGCUGcacaucuGGaCCGACaaccCCGGCGa -3'
miRNA:   3'- -GUGUGGCGGCc------CC-GGCUGgu--GGCCGU- -5'
19021 3' -65.2 NC_004684.1 + 56804 0.66 0.32697
Target:  5'- gAUGCCGUCGGugacggacguGGCCaucgaccacGACCACCuGGCGc -3'
miRNA:   3'- gUGUGGCGGCC----------CCGG---------CUGGUGG-CCGU- -5'
19021 3' -65.2 NC_004684.1 + 40326 0.66 0.32697
Target:  5'- cCACGCCugcggacccggcGCUGGagaugaGGCUGgacacaauGCCACCGGCAc -3'
miRNA:   3'- -GUGUGG------------CGGCC------CCGGC--------UGGUGGCCGU- -5'
19021 3' -65.2 NC_004684.1 + 23000 0.66 0.32697
Target:  5'- --aACgGCCuGGGCCGacugGCCGCCgucGGCAg -3'
miRNA:   3'- gugUGgCGGcCCCGGC----UGGUGG---CCGU- -5'
19021 3' -65.2 NC_004684.1 + 56328 0.66 0.326235
Target:  5'- cCGCGCUGCgcgaguucaugucCGGGGagauCGACCAgcugaucgcCCGGCAc -3'
miRNA:   3'- -GUGUGGCG-------------GCCCCg---GCUGGU---------GGCCGU- -5'
19021 3' -65.2 NC_004684.1 + 3422 0.66 0.319676
Target:  5'- gGCACCGCU--GGCCG-CCACagucagCGGCAc -3'
miRNA:   3'- gUGUGGCGGccCCGGCuGGUG------GCCGU- -5'
19021 3' -65.2 NC_004684.1 + 18370 0.66 0.319676
Target:  5'- -cCugCGCCGGuGGCCGAUCugUucaGCGg -3'
miRNA:   3'- guGugGCGGCC-CCGGCUGGugGc--CGU- -5'
19021 3' -65.2 NC_004684.1 + 35476 0.66 0.319676
Target:  5'- -cCGCCGaCCGGcagaauGCCGACCGcgaacaacgucCCGGCGu -3'
miRNA:   3'- guGUGGC-GGCCc-----CGGCUGGU-----------GGCCGU- -5'
19021 3' -65.2 NC_004684.1 + 16356 0.66 0.319676
Target:  5'- gCugGCCgacaaGCUGGcGGCCGAguaCACCcGGCAc -3'
miRNA:   3'- -GugUGG-----CGGCC-CCGGCUg--GUGG-CCGU- -5'
19021 3' -65.2 NC_004684.1 + 26582 0.66 0.319676
Target:  5'- gCGCGCgGCggugugCGcGGGUUcGCCACCGGCGg -3'
miRNA:   3'- -GUGUGgCG------GC-CCCGGcUGGUGGCCGU- -5'
19021 3' -65.2 NC_004684.1 + 43710 0.66 0.319676
Target:  5'- cCACGCUcugGUCcGGGCCGACCAggccgUCGGUg -3'
miRNA:   3'- -GUGUGG---CGGcCCCGGCUGGU-----GGCCGu -5'
19021 3' -65.2 NC_004684.1 + 4292 0.66 0.318954
Target:  5'- aAUGCCGCCGGGucGCCGuaauguagugcuuGCaCGgCGGCAc -3'
miRNA:   3'- gUGUGGCGGCCC--CGGC-------------UG-GUgGCCGU- -5'
19021 3' -65.2 NC_004684.1 + 63420 0.66 0.315359
Target:  5'- gCACACCggccaggaugaccugGCCGGGGUCGu---CCGGUg -3'
miRNA:   3'- -GUGUGG---------------CGGCCCCGGCugguGGCCGu -5'
19021 3' -65.2 NC_004684.1 + 52603 0.66 0.312505
Target:  5'- gCGCGCCGCCGuaGuuGugCGCCaGUAc -3'
miRNA:   3'- -GUGUGGCGGCccCggCugGUGGcCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.