miRNA display CGI


Results 1 - 20 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19040 5' -57.3 NC_004684.1 + 30776 0.66 0.692419
Target:  5'- aGGUGGACGggugggugcugcuguCCGGCACCUAcaccGUgCCGu- -3'
miRNA:   3'- -CCACCUGU---------------GGCCGUGGGU----CAaGGUga -5'
19040 5' -57.3 NC_004684.1 + 25569 0.66 0.688203
Target:  5'- --cGGugGCCaGCGCCUccgGGUggUCCACg -3'
miRNA:   3'- ccaCCugUGGcCGUGGG---UCA--AGGUGa -5'
19040 5' -57.3 NC_004684.1 + 19403 0.66 0.677631
Target:  5'- uGUGGGCguucACCGGUcgCCAGUUCgGCc -3'
miRNA:   3'- cCACCUG----UGGCCGugGGUCAAGgUGa -5'
19040 5' -57.3 NC_004684.1 + 14123 0.66 0.677631
Target:  5'- aGGUGa--ACCGGUacACCCGGUUCUucACg -3'
miRNA:   3'- -CCACcugUGGCCG--UGGGUCAAGG--UGa -5'
19040 5' -57.3 NC_004684.1 + 24764 0.66 0.677631
Target:  5'- uGGcagGGAagACCGGCACCgGG--CCGCUg -3'
miRNA:   3'- -CCa--CCUg-UGGCCGUGGgUCaaGGUGA- -5'
19040 5' -57.3 NC_004684.1 + 57602 0.66 0.667018
Target:  5'- cGGUGGugACCGuGCACgagcgguacggCCAG--CCACc -3'
miRNA:   3'- -CCACCugUGGC-CGUG-----------GGUCaaGGUGa -5'
19040 5' -57.3 NC_004684.1 + 12679 0.66 0.667018
Target:  5'- uGGUGGAgGCCGaCGaggCCAuUUCCGCUg -3'
miRNA:   3'- -CCACCUgUGGCcGUg--GGUcAAGGUGA- -5'
19040 5' -57.3 NC_004684.1 + 10331 0.66 0.656375
Target:  5'- aGGUGGugccugccaccGCGCUGGUGCCguGgcCCACc -3'
miRNA:   3'- -CCACC-----------UGUGGCCGUGGguCaaGGUGa -5'
19040 5' -57.3 NC_004684.1 + 37240 0.66 0.645711
Target:  5'- cGGUGcucGCACCGGauauCACCCAGacaCCGCc -3'
miRNA:   3'- -CCACc--UGUGGCC----GUGGGUCaa-GGUGa -5'
19040 5' -57.3 NC_004684.1 + 25214 0.66 0.645711
Target:  5'- gGGUGGcuuCACCGGCACgCUGGa--CGCg -3'
miRNA:   3'- -CCACCu--GUGGCCGUG-GGUCaagGUGa -5'
19040 5' -57.3 NC_004684.1 + 27743 0.66 0.64571
Target:  5'- --cGGAgGCCGGUACCUggaGGUgaccgugCCGCg -3'
miRNA:   3'- ccaCCUgUGGCCGUGGG---UCAa------GGUGa -5'
19040 5' -57.3 NC_004684.1 + 27084 0.66 0.644643
Target:  5'- cGUGGACAUCGcCGCCCAGaucgguaccgacuUUgCGCUg -3'
miRNA:   3'- cCACCUGUGGCcGUGGGUC-------------AAgGUGA- -5'
19040 5' -57.3 NC_004684.1 + 14483 0.67 0.635034
Target:  5'- aGGUGGuuGCCGGUACcacgCCGGUcgCCGgUg -3'
miRNA:   3'- -CCACCugUGGCCGUG----GGUCAa-GGUgA- -5'
19040 5' -57.3 NC_004684.1 + 62028 0.67 0.635034
Target:  5'- cGGUGaGACGCCGGU-CCUcGaaCCACg -3'
miRNA:   3'- -CCAC-CUGUGGCCGuGGGuCaaGGUGa -5'
19040 5' -57.3 NC_004684.1 + 12179 0.67 0.635034
Target:  5'- cGGUGccaACGCCucguaGGCAUCCAGcgCCGCc -3'
miRNA:   3'- -CCACc--UGUGG-----CCGUGGGUCaaGGUGa -5'
19040 5' -57.3 NC_004684.1 + 36607 0.67 0.635034
Target:  5'- aGGUgccGGACAgCaGCACCCAcccgUCCACc -3'
miRNA:   3'- -CCA---CCUGUgGcCGUGGGUca--AGGUGa -5'
19040 5' -57.3 NC_004684.1 + 43933 0.67 0.635034
Target:  5'- uGGcGGGCAUUGGCuCCCAGgUCuCGCc -3'
miRNA:   3'- -CCaCCUGUGGCCGuGGGUCaAG-GUGa -5'
19040 5' -57.3 NC_004684.1 + 63059 0.67 0.635034
Target:  5'- cGGUGGgugucauagGCACUccaGuGCGCCCGGUgcaCCGCg -3'
miRNA:   3'- -CCACC---------UGUGG---C-CGUGGGUCAa--GGUGa -5'
19040 5' -57.3 NC_004684.1 + 40442 0.67 0.624355
Target:  5'- -uUGGuCAgCGGUGCCCAGgcggCCGCc -3'
miRNA:   3'- ccACCuGUgGCCGUGGGUCaa--GGUGa -5'
19040 5' -57.3 NC_004684.1 + 63767 0.67 0.61795
Target:  5'- aGGUGGcGCGCuuCGGCcacucguguucggcgGCCCAGUgcgcgacguacUCCACg -3'
miRNA:   3'- -CCACC-UGUG--GCCG---------------UGGGUCA-----------AGGUGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.