miRNA display CGI


Results 1 - 20 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19044 5' -57.1 NC_004684.1 + 5115 0.66 0.687248
Target:  5'- cAgCGCCUGGACcuGCUGAagGCcACCg -3'
miRNA:   3'- aUgGCGGGUCUGc-CGACUagCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 26949 0.66 0.687248
Target:  5'- gGCCGCCUGGGCaccGCUGAcCaaGGCCg -3'
miRNA:   3'- aUGGCGGGUCUGc--CGACUaGcgUUGG- -5'
19044 5' -57.1 NC_004684.1 + 28657 0.66 0.687248
Target:  5'- gUGCCG-CgAGACGGCggUGAcgcaggugauUCGCAACg -3'
miRNA:   3'- -AUGGCgGgUCUGCCG--ACU----------AGCGUUGg -5'
19044 5' -57.1 NC_004684.1 + 52908 0.66 0.687248
Target:  5'- -uCCGgCCAGcACGGCgg--CGUGGCCg -3'
miRNA:   3'- auGGCgGGUC-UGCCGacuaGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 15886 0.66 0.687248
Target:  5'- -cCCG-CCAGGCGGCggUGAccgggCGguGCCa -3'
miRNA:   3'- auGGCgGGUCUGCCG--ACUa----GCguUGG- -5'
19044 5' -57.1 NC_004684.1 + 42546 0.66 0.687248
Target:  5'- aACgGCCCGGugGcGCUac-CGCuGCCg -3'
miRNA:   3'- aUGgCGGGUCugC-CGAcuaGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 59467 0.66 0.687248
Target:  5'- gGCCuuGCCUGGGuucuccacCGGCUGGcUgGCGGCCa -3'
miRNA:   3'- aUGG--CGGGUCU--------GCCGACU-AgCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 17798 0.66 0.687248
Target:  5'- -gUCGCCggaaaugaAGGCGGCUGA--GCAGCUg -3'
miRNA:   3'- auGGCGGg-------UCUGCCGACUagCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 26698 0.66 0.680854
Target:  5'- cGCCGCCCAGcugaaguucgucgccACcuuGCUGGccgagCGCGACUg -3'
miRNA:   3'- aUGGCGGGUC---------------UGc--CGACUa----GCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 24912 0.66 0.676582
Target:  5'- cGCCGCCgcgauCAG-CGcGCUGggCGgCGACCc -3'
miRNA:   3'- aUGGCGG-----GUCuGC-CGACuaGC-GUUGG- -5'
19044 5' -57.1 NC_004684.1 + 50097 0.66 0.676582
Target:  5'- cACCacgaCCAGGCGGCUGGcccccaccUCGaUGGCCa -3'
miRNA:   3'- aUGGcg--GGUCUGCCGACU--------AGC-GUUGG- -5'
19044 5' -57.1 NC_004684.1 + 58374 0.66 0.676582
Target:  5'- uUGCCGCCCcGcACGGCaccgCGCGuggagGCCu -3'
miRNA:   3'- -AUGGCGGGuC-UGCCGacuaGCGU-----UGG- -5'
19044 5' -57.1 NC_004684.1 + 55762 0.66 0.676582
Target:  5'- aUGCCGacggUCAGGCGGCcGAcggccagcUCGguGCCg -3'
miRNA:   3'- -AUGGCg---GGUCUGCCGaCU--------AGCguUGG- -5'
19044 5' -57.1 NC_004684.1 + 3802 0.66 0.676582
Target:  5'- cGCCGCCUuGGCGGUcaaggaucugcUGggCGCGuucggcguGCCg -3'
miRNA:   3'- aUGGCGGGuCUGCCG-----------ACuaGCGU--------UGG- -5'
19044 5' -57.1 NC_004684.1 + 5884 0.66 0.676582
Target:  5'- cACCaGCCUGaccggguggcGGCGGCgcUGAUCGCGcacgACCg -3'
miRNA:   3'- aUGG-CGGGU----------CUGCCG--ACUAGCGU----UGG- -5'
19044 5' -57.1 NC_004684.1 + 13909 0.66 0.676582
Target:  5'- cACCGacggCCAGAucgacagcUGGCUGGcggcUCGCAACa -3'
miRNA:   3'- aUGGCg---GGUCU--------GCCGACU----AGCGUUGg -5'
19044 5' -57.1 NC_004684.1 + 398 0.66 0.676582
Target:  5'- cACCGCCguGGCGggcaaGCUGG--GCGACUg -3'
miRNA:   3'- aUGGCGGguCUGC-----CGACUagCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 41620 0.66 0.676582
Target:  5'- gUGCCGCcgguggagCCGGACgccaGGCcgggGAUCGC-GCCg -3'
miRNA:   3'- -AUGGCG--------GGUCUG----CCGa---CUAGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 39295 0.66 0.676582
Target:  5'- aACCGCaCCAccCGGUgcgGGUCGCGcggcgGCCc -3'
miRNA:   3'- aUGGCG-GGUcuGCCGa--CUAGCGU-----UGG- -5'
19044 5' -57.1 NC_004684.1 + 10579 0.66 0.670162
Target:  5'- -cCCGCCgAucCGGCUGGUucggcgcgcgaggugCGCAACUg -3'
miRNA:   3'- auGGCGGgUcuGCCGACUA---------------GCGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.