Results 1 - 20 of 199 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19044 | 5' | -57.1 | NC_004684.1 | + | 5115 | 0.66 | 0.687248 |
Target: 5'- cAgCGCCUGGACcuGCUGAagGCcACCg -3' miRNA: 3'- aUgGCGGGUCUGc-CGACUagCGuUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 26949 | 0.66 | 0.687248 |
Target: 5'- gGCCGCCUGGGCaccGCUGAcCaaGGCCg -3' miRNA: 3'- aUGGCGGGUCUGc--CGACUaGcgUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 28657 | 0.66 | 0.687248 |
Target: 5'- gUGCCG-CgAGACGGCggUGAcgcaggugauUCGCAACg -3' miRNA: 3'- -AUGGCgGgUCUGCCG--ACU----------AGCGUUGg -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 52908 | 0.66 | 0.687248 |
Target: 5'- -uCCGgCCAGcACGGCgg--CGUGGCCg -3' miRNA: 3'- auGGCgGGUC-UGCCGacuaGCGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 15886 | 0.66 | 0.687248 |
Target: 5'- -cCCG-CCAGGCGGCggUGAccgggCGguGCCa -3' miRNA: 3'- auGGCgGGUCUGCCG--ACUa----GCguUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 42546 | 0.66 | 0.687248 |
Target: 5'- aACgGCCCGGugGcGCUac-CGCuGCCg -3' miRNA: 3'- aUGgCGGGUCugC-CGAcuaGCGuUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 59467 | 0.66 | 0.687248 |
Target: 5'- gGCCuuGCCUGGGuucuccacCGGCUGGcUgGCGGCCa -3' miRNA: 3'- aUGG--CGGGUCU--------GCCGACU-AgCGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 17798 | 0.66 | 0.687248 |
Target: 5'- -gUCGCCggaaaugaAGGCGGCUGA--GCAGCUg -3' miRNA: 3'- auGGCGGg-------UCUGCCGACUagCGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 26698 | 0.66 | 0.680854 |
Target: 5'- cGCCGCCCAGcugaaguucgucgccACcuuGCUGGccgagCGCGACUg -3' miRNA: 3'- aUGGCGGGUC---------------UGc--CGACUa----GCGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 24912 | 0.66 | 0.676582 |
Target: 5'- cGCCGCCgcgauCAG-CGcGCUGggCGgCGACCc -3' miRNA: 3'- aUGGCGG-----GUCuGC-CGACuaGC-GUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 50097 | 0.66 | 0.676582 |
Target: 5'- cACCacgaCCAGGCGGCUGGcccccaccUCGaUGGCCa -3' miRNA: 3'- aUGGcg--GGUCUGCCGACU--------AGC-GUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 58374 | 0.66 | 0.676582 |
Target: 5'- uUGCCGCCCcGcACGGCaccgCGCGuggagGCCu -3' miRNA: 3'- -AUGGCGGGuC-UGCCGacuaGCGU-----UGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 55762 | 0.66 | 0.676582 |
Target: 5'- aUGCCGacggUCAGGCGGCcGAcggccagcUCGguGCCg -3' miRNA: 3'- -AUGGCg---GGUCUGCCGaCU--------AGCguUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 3802 | 0.66 | 0.676582 |
Target: 5'- cGCCGCCUuGGCGGUcaaggaucugcUGggCGCGuucggcguGCCg -3' miRNA: 3'- aUGGCGGGuCUGCCG-----------ACuaGCGU--------UGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 5884 | 0.66 | 0.676582 |
Target: 5'- cACCaGCCUGaccggguggcGGCGGCgcUGAUCGCGcacgACCg -3' miRNA: 3'- aUGG-CGGGU----------CUGCCG--ACUAGCGU----UGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 13909 | 0.66 | 0.676582 |
Target: 5'- cACCGacggCCAGAucgacagcUGGCUGGcggcUCGCAACa -3' miRNA: 3'- aUGGCg---GGUCU--------GCCGACU----AGCGUUGg -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 398 | 0.66 | 0.676582 |
Target: 5'- cACCGCCguGGCGggcaaGCUGG--GCGACUg -3' miRNA: 3'- aUGGCGGguCUGC-----CGACUagCGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 41620 | 0.66 | 0.676582 |
Target: 5'- gUGCCGCcgguggagCCGGACgccaGGCcgggGAUCGC-GCCg -3' miRNA: 3'- -AUGGCG--------GGUCUG----CCGa---CUAGCGuUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 39295 | 0.66 | 0.676582 |
Target: 5'- aACCGCaCCAccCGGUgcgGGUCGCGcggcgGCCc -3' miRNA: 3'- aUGGCG-GGUcuGCCGa--CUAGCGU-----UGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 10579 | 0.66 | 0.670162 |
Target: 5'- -cCCGCCgAucCGGCUGGUucggcgcgcgaggugCGCAACUg -3' miRNA: 3'- auGGCGGgUcuGCCGACUA---------------GCGUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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