miRNA display CGI


Results 1 - 20 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19053 3' -65.2 NC_004684.1 + 22014 0.66 0.319645
Target:  5'- gGGcCGGUGCuCGCCG-ACCugaACCGCgACa -3'
miRNA:   3'- gCC-GCCGUG-GCGGCgUGG---UGGCGgUG- -5'
19053 3' -65.2 NC_004684.1 + 57578 0.66 0.319645
Target:  5'- aCGGUGGCcuugAgCGUCggGUGCCACCGgCGCa -3'
miRNA:   3'- -GCCGCCG----UgGCGG--CGUGGUGGCgGUG- -5'
19053 3' -65.2 NC_004684.1 + 40481 0.66 0.319645
Target:  5'- uCGGCGGuCugCGCCgagugcgccaGCACCugguugaCGCgCACg -3'
miRNA:   3'- -GCCGCC-GugGCGG----------CGUGGug-----GCG-GUG- -5'
19053 3' -65.2 NC_004684.1 + 19736 0.66 0.319645
Target:  5'- aGcGCGGCACCuggagcguGCaGUACCugCGCgGCc -3'
miRNA:   3'- gC-CGCCGUGG--------CGgCGUGGugGCGgUG- -5'
19053 3' -65.2 NC_004684.1 + 35761 0.66 0.319645
Target:  5'- uGGUGGUGCagacccagcgcgCGCCGCGcuCCAUCGUgGCg -3'
miRNA:   3'- gCCGCCGUG------------GCGGCGU--GGUGGCGgUG- -5'
19053 3' -65.2 NC_004684.1 + 14801 0.66 0.319645
Target:  5'- aCGGCGGCG-CGCUGU-CCACCGg--- -3'
miRNA:   3'- -GCCGCCGUgGCGGCGuGGUGGCggug -5'
19053 3' -65.2 NC_004684.1 + 47595 0.66 0.319645
Target:  5'- uCGGCGauGUagGCCGCa-CACCGCCGUCGg -3'
miRNA:   3'- -GCCGC--CG--UGGCGgcGUGGUGGCGGUg -5'
19053 3' -65.2 NC_004684.1 + 32800 0.66 0.319645
Target:  5'- uGGUucgccaauuGGCAUCGUCagcgaGCAgCACCGCCAg -3'
miRNA:   3'- gCCG---------CCGUGGCGG-----CGUgGUGGCGGUg -5'
19053 3' -65.2 NC_004684.1 + 13037 0.66 0.319645
Target:  5'- --cCGGCACUuGCCaacaucuCCACCGCCGCg -3'
miRNA:   3'- gccGCCGUGG-CGGcgu----GGUGGCGGUG- -5'
19053 3' -65.2 NC_004684.1 + 24613 0.66 0.31892
Target:  5'- aGGCccGGCagGCCGCucaaaccggggauCGCACCggccagGCCGCCAa -3'
miRNA:   3'- gCCG--CCG--UGGCG-------------GCGUGG------UGGCGGUg -5'
19053 3' -65.2 NC_004684.1 + 15906 0.66 0.315314
Target:  5'- gGGCGGUGCCauCCGCAggUCGCCauccugggggccucgGCCACc -3'
miRNA:   3'- gCCGCCGUGGc-GGCGU--GGUGG---------------CGGUG- -5'
19053 3' -65.2 NC_004684.1 + 48735 0.66 0.312451
Target:  5'- gCGGCGGCACgauggucaCGUCGuCACCgggcagagguccACCGCUg- -3'
miRNA:   3'- -GCCGCCGUG--------GCGGC-GUGG------------UGGCGGug -5'
19053 3' -65.2 NC_004684.1 + 31178 0.66 0.312451
Target:  5'- gCGGUGGC-CaCGCUGCGCaGCUGCaucCACg -3'
miRNA:   3'- -GCCGCCGuG-GCGGCGUGgUGGCG---GUG- -5'
19053 3' -65.2 NC_004684.1 + 25605 0.66 0.312451
Target:  5'- uCGGCgucGGCACCugGCCGCGuCCguaCGcCCACu -3'
miRNA:   3'- -GCCG---CCGUGG--CGGCGU-GGug-GC-GGUG- -5'
19053 3' -65.2 NC_004684.1 + 39092 0.66 0.312451
Target:  5'- cCGGUGGUGCCuaCGCACC-CgGUgACc -3'
miRNA:   3'- -GCCGCCGUGGcgGCGUGGuGgCGgUG- -5'
19053 3' -65.2 NC_004684.1 + 15093 0.66 0.312451
Target:  5'- gCGGUGGcCGCCcuggagGCCG-ACCuuGCCGUCACc -3'
miRNA:   3'- -GCCGCC-GUGG------CGGCgUGG--UGGCGGUG- -5'
19053 3' -65.2 NC_004684.1 + 58839 0.66 0.312451
Target:  5'- uCGuGCGGCACgaacaccaCGCCGUugCcgaucaGCCGCgACu -3'
miRNA:   3'- -GC-CGCCGUG--------GCGGCGugG------UGGCGgUG- -5'
19053 3' -65.2 NC_004684.1 + 19688 0.66 0.312451
Target:  5'- gCGGCGGCaagGCCugGCCGaGCCaagaccugggACgGCCACu -3'
miRNA:   3'- -GCCGCCG---UGG--CGGCgUGG----------UGgCGGUG- -5'
19053 3' -65.2 NC_004684.1 + 10793 0.66 0.312451
Target:  5'- aCGGCgucGGCACCGuaGCGgCAUCcggcggcuggGCCGCa -3'
miRNA:   3'- -GCCG---CCGUGGCggCGUgGUGG----------CGGUG- -5'
19053 3' -65.2 NC_004684.1 + 13252 0.66 0.312451
Target:  5'- uGGCcaGGCcgugACCGCCagcGCGCUggugGCCGCCGg -3'
miRNA:   3'- gCCG--CCG----UGGCGG---CGUGG----UGGCGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.