miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19066 3' -61.8 NC_004684.1 + 9802 0.66 0.486548
Target:  5'- cCUGcGCCgGUGGcACCCGACgcUCaaGGCc -3'
miRNA:   3'- -GAC-CGG-CACC-UGGGCUGguAGggCCG- -5'
19066 3' -61.8 NC_004684.1 + 43899 0.66 0.486548
Target:  5'- -gGGCagGUGGAUgacaCGGCCAucUCCUGGUu -3'
miRNA:   3'- gaCCGg-CACCUGg---GCUGGU--AGGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 46324 0.66 0.486548
Target:  5'- -cGGCCcaGGuGCCCGGUCAgcaCCGGCa -3'
miRNA:   3'- gaCCGGcaCC-UGGGCUGGUag-GGCCG- -5'
19066 3' -61.8 NC_004684.1 + 60275 0.66 0.486548
Target:  5'- -cGGCgGUGGcgguuGCgUGGCCcgGUCCuCGGCg -3'
miRNA:   3'- gaCCGgCACC-----UGgGCUGG--UAGG-GCCG- -5'
19066 3' -61.8 NC_004684.1 + 32852 0.66 0.483676
Target:  5'- gCUGGCCaUGGcCUCGacauacagcucguaGCUGUCCUGGUa -3'
miRNA:   3'- -GACCGGcACCuGGGC--------------UGGUAGGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 1068 0.66 0.477007
Target:  5'- gCUGGCUGgcggcgcUGGACgUGAUCGgugaccaggccgcgaCCCGGCg -3'
miRNA:   3'- -GACCGGC-------ACCUGgGCUGGUa--------------GGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 27801 0.66 0.477007
Target:  5'- -cGGCgGUucGGuCCUGGCCugcUCCUGGUg -3'
miRNA:   3'- gaCCGgCA--CCuGGGCUGGu--AGGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 65922 0.66 0.477007
Target:  5'- -cGGCgCGUaGGucuCCCGACCGUUgaGGUc -3'
miRNA:   3'- gaCCG-GCA-CCu--GGGCUGGUAGggCCG- -5'
19066 3' -61.8 NC_004684.1 + 41357 0.66 0.476058
Target:  5'- cCUGGCCGccuugcuUGGugaagUCCGGCaCGUugaaCCCGGCc -3'
miRNA:   3'- -GACCGGC-------ACCu----GGGCUG-GUA----GGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 26963 0.66 0.467559
Target:  5'- -aGGCgGUGGccaACgCCG-CCAUCCaGGCc -3'
miRNA:   3'- gaCCGgCACC---UG-GGCuGGUAGGgCCG- -5'
19066 3' -61.8 NC_004684.1 + 58402 0.66 0.467559
Target:  5'- -aGGCCuUGG-CCCGGCCG--CCGGa -3'
miRNA:   3'- gaCCGGcACCuGGGCUGGUagGGCCg -5'
19066 3' -61.8 NC_004684.1 + 381 0.66 0.464744
Target:  5'- cCUGGCCGa-GACCgaCGGCCccgcguacggggaaAUCCUGGUg -3'
miRNA:   3'- -GACCGGCacCUGG--GCUGG--------------UAGGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 67013 0.66 0.458209
Target:  5'- -gGGCCGUcGGuCUCGGCCAggUCGcGCa -3'
miRNA:   3'- gaCCGGCA-CCuGGGCUGGUagGGC-CG- -5'
19066 3' -61.8 NC_004684.1 + 64706 0.66 0.458209
Target:  5'- -aGGCCGgGGAUgCGGug--CCCGGCg -3'
miRNA:   3'- gaCCGGCaCCUGgGCUgguaGGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 29382 0.66 0.458209
Target:  5'- aCUGGUCGcgcuUGuGCuuGGCCuGUUCCGGCu -3'
miRNA:   3'- -GACCGGC----ACcUGggCUGG-UAGGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 64666 0.66 0.452647
Target:  5'- gUGGCCGUGcGGuguggcgcacuugccCCCGGCa---CCGGCc -3'
miRNA:   3'- gACCGGCAC-CU---------------GGGCUGguagGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 11382 0.66 0.448959
Target:  5'- gUGGCguccauCGUGGccucguucACgCCGACCAccuaCCCGGCc -3'
miRNA:   3'- gACCG------GCACC--------UG-GGCUGGUa---GGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 54655 0.66 0.448959
Target:  5'- -aGGgCGUcGACCuCGGCCugGUCCaCGGCc -3'
miRNA:   3'- gaCCgGCAcCUGG-GCUGG--UAGG-GCCG- -5'
19066 3' -61.8 NC_004684.1 + 30058 0.66 0.448959
Target:  5'- gUGaGCC-UGGuaCCGGCC-UCCCGGCc -3'
miRNA:   3'- gAC-CGGcACCugGGCUGGuAGGGCCG- -5'
19066 3' -61.8 NC_004684.1 + 62660 0.66 0.448959
Target:  5'- -cGGCUGUGG--CCGugCGcgaggUCCUGGCc -3'
miRNA:   3'- gaCCGGCACCugGGCugGU-----AGGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.