miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19067 3' -57.9 NC_004684.1 + 61517 0.66 0.61321
Target:  5'- --cCGGuCAGGCUggugcugcccGGCCUgCCAgucgcACGCCUg -3'
miRNA:   3'- guaGCC-GUUCGA----------CCGGA-GGU-----UGCGGA- -5'
19067 3' -57.9 NC_004684.1 + 66897 0.66 0.61321
Target:  5'- -uUCGGC--GC-GGCCUUCGGCGCg- -3'
miRNA:   3'- guAGCCGuuCGaCCGGAGGUUGCGga -5'
19067 3' -57.9 NC_004684.1 + 11294 0.66 0.61321
Target:  5'- gAUCGGCAccacGCUGGUggCCAcCGCUg -3'
miRNA:   3'- gUAGCCGUu---CGACCGgaGGUuGCGGa -5'
19067 3' -57.9 NC_004684.1 + 13779 0.66 0.61321
Target:  5'- ---aGGCGAccaacCUGcGCCUCCAGCGCg- -3'
miRNA:   3'- guagCCGUUc----GAC-CGGAGGUUGCGga -5'
19067 3' -57.9 NC_004684.1 + 10256 0.66 0.61321
Target:  5'- gCGUgGaGCGGGCcaaccaacUGGCCagCGACGCCg -3'
miRNA:   3'- -GUAgC-CGUUCG--------ACCGGagGUUGCGGa -5'
19067 3' -57.9 NC_004684.1 + 9337 0.66 0.61321
Target:  5'- ---gGGaCGAGgaGGCCUCCggUGCg- -3'
miRNA:   3'- guagCC-GUUCgaCCGGAGGuuGCGga -5'
19067 3' -57.9 NC_004684.1 + 22209 0.66 0.602425
Target:  5'- --cUGGCGcAGgUGGCCUCCcuGCGCg- -3'
miRNA:   3'- guaGCCGU-UCgACCGGAGGu-UGCGga -5'
19067 3' -57.9 NC_004684.1 + 36162 0.66 0.602425
Target:  5'- aCAUCGGCAA--UGGCgUcaCCGGCGUCg -3'
miRNA:   3'- -GUAGCCGUUcgACCGgA--GGUUGCGGa -5'
19067 3' -57.9 NC_004684.1 + 17183 0.66 0.602425
Target:  5'- -uUCGGCAc-CUGGCa--CGACGCCg -3'
miRNA:   3'- guAGCCGUucGACCGgagGUUGCGGa -5'
19067 3' -57.9 NC_004684.1 + 51034 0.66 0.602425
Target:  5'- -cUCGGCcgccAGCUuGUCggCCAGCGCCa -3'
miRNA:   3'- guAGCCGu---UCGAcCGGa-GGUUGCGGa -5'
19067 3' -57.9 NC_004684.1 + 62280 0.66 0.602425
Target:  5'- -uUCaGCAGGUccaGGCgcugCUCCAGCGCCg -3'
miRNA:   3'- guAGcCGUUCGa--CCG----GAGGUUGCGGa -5'
19067 3' -57.9 NC_004684.1 + 48924 0.66 0.602425
Target:  5'- gGUCcGCAGGCccGGCCUCgu-CGCCg -3'
miRNA:   3'- gUAGcCGUUCGa-CCGGAGguuGCGGa -5'
19067 3' -57.9 NC_004684.1 + 41675 0.66 0.602425
Target:  5'- --cCGGCAGGCUcaugauguugGGCaugCCAgcuGCGCCa -3'
miRNA:   3'- guaGCCGUUCGA----------CCGga-GGU---UGCGGa -5'
19067 3' -57.9 NC_004684.1 + 8995 0.66 0.602425
Target:  5'- --gCGGcCGGGCcaaGGCCUCCAcGCGCg- -3'
miRNA:   3'- guaGCC-GUUCGa--CCGGAGGU-UGCGga -5'
19067 3' -57.9 NC_004684.1 + 53978 0.66 0.601348
Target:  5'- aGUCGGUGAGCagGGCCgacacgUCCGGCucaaucgGCCa -3'
miRNA:   3'- gUAGCCGUUCGa-CCGG------AGGUUG-------CGGa -5'
19067 3' -57.9 NC_004684.1 + 3347 0.66 0.591665
Target:  5'- -uUCGGCGuuccaGGC-GGUgCUCCAgcACGCCUg -3'
miRNA:   3'- guAGCCGU-----UCGaCCG-GAGGU--UGCGGA- -5'
19067 3' -57.9 NC_004684.1 + 26385 0.66 0.591665
Target:  5'- aCGUCGGCGGcgauCUGGCCaaCGcCGCCa -3'
miRNA:   3'- -GUAGCCGUUc---GACCGGagGUuGCGGa -5'
19067 3' -57.9 NC_004684.1 + 22944 0.66 0.591665
Target:  5'- -uUCGGCAAcacGCcgaaGGCCagaagcgcgCCAACGCCg -3'
miRNA:   3'- guAGCCGUU---CGa---CCGGa--------GGUUGCGGa -5'
19067 3' -57.9 NC_004684.1 + 65838 0.66 0.591665
Target:  5'- cCAUCaGCAGGCgguugugggGGCCgCUggUGCCa -3'
miRNA:   3'- -GUAGcCGUUCGa--------CCGGaGGuuGCGGa -5'
19067 3' -57.9 NC_004684.1 + 21019 0.66 0.591665
Target:  5'- aCAUCGGCAucGUgaUGGCCgagCaCGACGaCCa -3'
miRNA:   3'- -GUAGCCGUu-CG--ACCGGa--G-GUUGC-GGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.