miRNA display CGI


Results 1 - 20 of 299 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19068 5' -64.1 NC_004684.1 + 39212 0.65 0.34526
Target:  5'- cGUGCGCC-UCGCGCagguugcacgccaGCCAUUGCAGg -3'
miRNA:   3'- cCGCGCGGuGGCGUGg------------CGGUGGCGUU- -5'
19068 5' -64.1 NC_004684.1 + 40767 0.66 0.343705
Target:  5'- -cCGCGCCgACgGUgucguuggcgaugacGCCGCCGCCGguGg -3'
miRNA:   3'- ccGCGCGG-UGgCG---------------UGGCGGUGGCguU- -5'
19068 5' -64.1 NC_004684.1 + 30280 0.66 0.343705
Target:  5'- cGGCaCGCCAgcccuCCucaacguucuccgcaGCAUCGCgCACCGCGAa -3'
miRNA:   3'- -CCGcGCGGU-----GG---------------CGUGGCG-GUGGCGUU- -5'
19068 5' -64.1 NC_004684.1 + 7153 0.66 0.34061
Target:  5'- aGGUG-GCCACCGC-CUGCgGgUGCAc -3'
miRNA:   3'- -CCGCgCGGUGGCGuGGCGgUgGCGUu -5'
19068 5' -64.1 NC_004684.1 + 62047 0.66 0.34061
Target:  5'- gGGUGgGCaugucaGCC-CACCGCCACC-CAc -3'
miRNA:   3'- -CCGCgCGg-----UGGcGUGGCGGUGGcGUu -5'
19068 5' -64.1 NC_004684.1 + 54802 0.66 0.34061
Target:  5'- uGGCGgGCCugaaugaCGUugauaGCCGCCugCGCc- -3'
miRNA:   3'- -CCGCgCGGug-----GCG-----UGGCGGugGCGuu -5'
19068 5' -64.1 NC_004684.1 + 40523 0.66 0.34061
Target:  5'- -aUGCGCUcCUGCGCCGCCucCUGCu- -3'
miRNA:   3'- ccGCGCGGuGGCGUGGCGGu-GGCGuu -5'
19068 5' -64.1 NC_004684.1 + 32001 0.66 0.34061
Target:  5'- aGGC-CGCCACCGaACUGCUgACCGgGc -3'
miRNA:   3'- -CCGcGCGGUGGCgUGGCGG-UGGCgUu -5'
19068 5' -64.1 NC_004684.1 + 20634 0.66 0.34061
Target:  5'- uGCGcCGCCugcguCCGCacgcuggacaauACCGCCGCCuCAAc -3'
miRNA:   3'- cCGC-GCGGu----GGCG------------UGGCGGUGGcGUU- -5'
19068 5' -64.1 NC_004684.1 + 16230 0.66 0.33984
Target:  5'- aGGCGCGauggaCGCCGCAUcccauuaCGUCGCuCGCc- -3'
miRNA:   3'- -CCGCGCg----GUGGCGUG-------GCGGUG-GCGuu -5'
19068 5' -64.1 NC_004684.1 + 63723 0.66 0.33984
Target:  5'- cGGUGCcggGCCACCGUAcgaugacCCGgCACCGgGc -3'
miRNA:   3'- -CCGCG---CGGUGGCGU-------GGCgGUGGCgUu -5'
19068 5' -64.1 NC_004684.1 + 38461 0.66 0.33984
Target:  5'- cGGCGCGaUCACCGCcgacaaggcaggcACCggcgucagcaagGCCACCGaCGc -3'
miRNA:   3'- -CCGCGC-GGUGGCG-------------UGG------------CGGUGGC-GUu -5'
19068 5' -64.1 NC_004684.1 + 59662 0.66 0.336006
Target:  5'- uGCGCGCCAgUCGCGCauugacccuuuccugCGCCgaGCUGCGc -3'
miRNA:   3'- cCGCGCGGU-GGCGUG---------------GCGG--UGGCGUu -5'
19068 5' -64.1 NC_004684.1 + 43813 0.66 0.332961
Target:  5'- uGGCGCGCgCGCaGCGaggUCGCCAgguacucguccCCGCAc -3'
miRNA:   3'- -CCGCGCG-GUGgCGU---GGCGGU-----------GGCGUu -5'
19068 5' -64.1 NC_004684.1 + 39671 0.66 0.332961
Target:  5'- cGCGUGCCucguGCuCGCGCUcgGCCGCCGa-- -3'
miRNA:   3'- cCGCGCGG----UG-GCGUGG--CGGUGGCguu -5'
19068 5' -64.1 NC_004684.1 + 23722 0.66 0.332961
Target:  5'- cGGCGCGCucaaCAUCGCugGCgGCgCACUGCu- -3'
miRNA:   3'- -CCGCGCG----GUGGCG--UGgCG-GUGGCGuu -5'
19068 5' -64.1 NC_004684.1 + 8272 0.66 0.332961
Target:  5'- cGUGCGCCGCgaccUGCGgCGCUACCacgGCAu -3'
miRNA:   3'- cCGCGCGGUG----GCGUgGCGGUGG---CGUu -5'
19068 5' -64.1 NC_004684.1 + 6904 0.66 0.332961
Target:  5'- uGGUGCGCCugCGCGacaucCCGCUcuACCu--- -3'
miRNA:   3'- -CCGCGCGGugGCGU-----GGCGG--UGGcguu -5'
19068 5' -64.1 NC_004684.1 + 22624 0.66 0.332961
Target:  5'- cGGCGCugugggagGCCGCCGCcaGCgGCgACCcCAAa -3'
miRNA:   3'- -CCGCG--------CGGUGGCG--UGgCGgUGGcGUU- -5'
19068 5' -64.1 NC_004684.1 + 15410 0.66 0.332961
Target:  5'- gGGCGCGaUgGCCGaCACCGUgGCCa--- -3'
miRNA:   3'- -CCGCGC-GgUGGC-GUGGCGgUGGcguu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.