miRNA display CGI


Results 1 - 20 of 342 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19071 5' -54.9 NC_004684.1 + 29610 0.66 0.794132
Target:  5'- uUCCuaGGCagCGGCGUGCAGCuGC-ACCGCGa -3'
miRNA:   3'- -AGG--CCG--GUUGCGCGUUG-UGuUGGUGU- -5'
19071 5' -54.9 NC_004684.1 + 50107 0.66 0.794132
Target:  5'- cCCGGCCAGaaaaccaGCGCcGCcgaGCAGuuGCAg -3'
miRNA:   3'- aGGCCGGUUg------CGCGuUG---UGUUggUGU- -5'
19071 5' -54.9 NC_004684.1 + 51814 0.66 0.794132
Target:  5'- -aCGGCCAggccGCGCGCGcugcGCugGAgCAUc -3'
miRNA:   3'- agGCCGGU----UGCGCGU----UGugUUgGUGu -5'
19071 5' -54.9 NC_004684.1 + 1407 0.66 0.794132
Target:  5'- aCCGGU--ACGgGCGGCugAGCCuGCGc -3'
miRNA:   3'- aGGCCGguUGCgCGUUGugUUGG-UGU- -5'
19071 5' -54.9 NC_004684.1 + 47940 0.66 0.794132
Target:  5'- uUCCaGGCCuugGugGCGuCGGCACGGCUg-- -3'
miRNA:   3'- -AGG-CCGG---UugCGC-GUUGUGUUGGugu -5'
19071 5' -54.9 NC_004684.1 + 34088 0.66 0.794132
Target:  5'- -gCGGCgGGCGCGaaCAACGCGAgUGCGc -3'
miRNA:   3'- agGCCGgUUGCGC--GUUGUGUUgGUGU- -5'
19071 5' -54.9 NC_004684.1 + 60320 0.66 0.794132
Target:  5'- cUCGG-CAAUGCGUucgAGCGCGAUCACc -3'
miRNA:   3'- aGGCCgGUUGCGCG---UUGUGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 5228 0.66 0.794132
Target:  5'- --aGGCCAugGUGUccgcGCGCGGCCGa- -3'
miRNA:   3'- aggCCGGUugCGCGu---UGUGUUGGUgu -5'
19071 5' -54.9 NC_004684.1 + 58113 0.66 0.794132
Target:  5'- -aUGGCCGGgucCGCGaaCAACGCGACCGg- -3'
miRNA:   3'- agGCCGGUU---GCGC--GUUGUGUUGGUgu -5'
19071 5' -54.9 NC_004684.1 + 9462 0.66 0.794132
Target:  5'- uUCCGGgCGcuggagcugGCGgGCaAGCGCAGCCGu- -3'
miRNA:   3'- -AGGCCgGU---------UGCgCG-UUGUGUUGGUgu -5'
19071 5' -54.9 NC_004684.1 + 65882 0.66 0.794132
Target:  5'- gCCGuugaGCgCGGCGCGCAGguUGGCCACc -3'
miRNA:   3'- aGGC----CG-GUUGCGCGUUguGUUGGUGu -5'
19071 5' -54.9 NC_004684.1 + 43490 0.66 0.793164
Target:  5'- -gCGGCgGGCGCaGCGGCagcagguGCAGCgGCAg -3'
miRNA:   3'- agGCCGgUUGCG-CGUUG-------UGUUGgUGU- -5'
19071 5' -54.9 NC_004684.1 + 45186 0.66 0.793164
Target:  5'- gUCGGCCAccaccccgccGCGCuccagcgGCAGCGCGuCCAUg -3'
miRNA:   3'- aGGCCGGU----------UGCG-------CGUUGUGUuGGUGu -5'
19071 5' -54.9 NC_004684.1 + 51241 0.66 0.793164
Target:  5'- aUCGGCCGgucgaugccgcacGCGCGCAugAuCGGCUcguACAg -3'
miRNA:   3'- aGGCCGGU-------------UGCGCGUugU-GUUGG---UGU- -5'
19071 5' -54.9 NC_004684.1 + 34666 0.66 0.784381
Target:  5'- aUCCggcaGGCCAACGCGa---GCAACCc-- -3'
miRNA:   3'- -AGG----CCGGUUGCGCguugUGUUGGugu -5'
19071 5' -54.9 NC_004684.1 + 20258 0.66 0.784381
Target:  5'- uUCCGGcCCGGCGCGUucC-CGGCCc-- -3'
miRNA:   3'- -AGGCC-GGUUGCGCGuuGuGUUGGugu -5'
19071 5' -54.9 NC_004684.1 + 12091 0.66 0.784381
Target:  5'- gCUGGCCcGCGCGgCGgccaucACGCAACCc-- -3'
miRNA:   3'- aGGCCGGuUGCGC-GU------UGUGUUGGugu -5'
19071 5' -54.9 NC_004684.1 + 28082 0.66 0.784381
Target:  5'- gCCGGgCCGcCGCGCGACcCGcACCGg- -3'
miRNA:   3'- aGGCC-GGUuGCGCGUUGuGU-UGGUgu -5'
19071 5' -54.9 NC_004684.1 + 26293 0.66 0.784381
Target:  5'- cUCGGCCAuCGguaCGCAGCuCGGCCAg- -3'
miRNA:   3'- aGGCCGGUuGC---GCGUUGuGUUGGUgu -5'
19071 5' -54.9 NC_004684.1 + 992 0.66 0.784381
Target:  5'- cUCGGCCAGCaccaagGUGCGgagauuuccaccGCGCAGCuCGCGg -3'
miRNA:   3'- aGGCCGGUUG------CGCGU------------UGUGUUG-GUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.