miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19076 5' -57.9 NC_004684.1 + 55713 0.66 0.601574
Target:  5'- cGCAGCU-GCU-UGCGCGGCGGucacGUUGg -3'
miRNA:   3'- aCGUCGAcCGGuACGUGCUGCU----CGAC- -5'
19076 5' -57.9 NC_004684.1 + 50108 0.66 0.597248
Target:  5'- gGCGGCUGGCCcccaccucgaugGCcagguugauCGGCGGGCa- -3'
miRNA:   3'- aCGUCGACCGGua----------CGu--------GCUGCUCGac -5'
19076 5' -57.9 NC_004684.1 + 27896 0.66 0.59077
Target:  5'- cGaCAGUUGGCCcgGCcuGCG-CGAGUUc -3'
miRNA:   3'- aC-GUCGACCGGuaCG--UGCuGCUCGAc -5'
19076 5' -57.9 NC_004684.1 + 22727 0.66 0.59077
Target:  5'- cGUGGCUGGCac-GCGCGACcGGUUc -3'
miRNA:   3'- aCGUCGACCGguaCGUGCUGcUCGAc -5'
19076 5' -57.9 NC_004684.1 + 5531 0.66 0.59077
Target:  5'- cGCAGCUGGUgGaugagGCGCaGaACGuGCUGc -3'
miRNA:   3'- aCGUCGACCGgUa----CGUG-C-UGCuCGAC- -5'
19076 5' -57.9 NC_004684.1 + 7854 0.66 0.59077
Target:  5'- cGCGcGCUGGCgGUGCAgGACcuguGCg- -3'
miRNA:   3'- aCGU-CGACCGgUACGUgCUGcu--CGac -5'
19076 5' -57.9 NC_004684.1 + 61236 0.66 0.59077
Target:  5'- cGCAcGCUGGCCGccgccgucgaacUGCucaacgACGACGAGg-- -3'
miRNA:   3'- aCGU-CGACCGGU------------ACG------UGCUGCUCgac -5'
19076 5' -57.9 NC_004684.1 + 66225 0.66 0.59077
Target:  5'- cUGCGGCUcGGCaccaaaGUGCACGGuCG-GCa- -3'
miRNA:   3'- -ACGUCGA-CCGg-----UACGUGCU-GCuCGac -5'
19076 5' -57.9 NC_004684.1 + 63817 0.66 0.59077
Target:  5'- gUGguGCUGGUgAUggugcggaugGCGCGGCGcacGCUGu -3'
miRNA:   3'- -ACguCGACCGgUA----------CGUGCUGCu--CGAC- -5'
19076 5' -57.9 NC_004684.1 + 46594 0.66 0.58
Target:  5'- cGCGGCUGGCguUGCGUGcCGguGGCUu -3'
miRNA:   3'- aCGUCGACCGguACGUGCuGC--UCGAc -5'
19076 5' -57.9 NC_004684.1 + 5925 0.66 0.58
Target:  5'- -cCGGCUGGCCGcGCugGccacCGGGCg- -3'
miRNA:   3'- acGUCGACCGGUaCGugCu---GCUCGac -5'
19076 5' -57.9 NC_004684.1 + 22196 0.66 0.58
Target:  5'- cUGCcGCUGGa---GCGCGGCGGGgUGg -3'
miRNA:   3'- -ACGuCGACCgguaCGUGCUGCUCgAC- -5'
19076 5' -57.9 NC_004684.1 + 52901 0.66 0.58
Target:  5'- aGgAGCguccGGCCA-GCACGGCG-GCg- -3'
miRNA:   3'- aCgUCGa---CCGGUaCGUGCUGCuCGac -5'
19076 5' -57.9 NC_004684.1 + 348 0.66 0.578925
Target:  5'- gGCgGGCaaccacacccugaUGGCCAUGCGCGACcuGGCc- -3'
miRNA:   3'- aCG-UCG-------------ACCGGUACGUGCUGc-UCGac -5'
19076 5' -57.9 NC_004684.1 + 20049 0.66 0.569272
Target:  5'- cGUGGCcuggUGGCCAUGCuCGACGcccacaccGGCg- -3'
miRNA:   3'- aCGUCG----ACCGGUACGuGCUGC--------UCGac -5'
19076 5' -57.9 NC_004684.1 + 58085 0.66 0.569272
Target:  5'- gUGCAGCUcGaCCGggaGCGCGcCGAGCa- -3'
miRNA:   3'- -ACGUCGAcC-GGUa--CGUGCuGCUCGac -5'
19076 5' -57.9 NC_004684.1 + 33495 0.66 0.569272
Target:  5'- cGCGGCggcGGCCcUGUACucGCGGGCg- -3'
miRNA:   3'- aCGUCGa--CCGGuACGUGc-UGCUCGac -5'
19076 5' -57.9 NC_004684.1 + 15735 0.66 0.569272
Target:  5'- -cCAGCaagGGCCucGUGCACGGCcagcAGCUGc -3'
miRNA:   3'- acGUCGa--CCGG--UACGUGCUGc---UCGAC- -5'
19076 5' -57.9 NC_004684.1 + 50547 0.66 0.569272
Target:  5'- gGCugAGUUGGCCuuucgugGUugGugGAGCg- -3'
miRNA:   3'- aCG--UCGACCGGua-----CGugCugCUCGac -5'
19076 5' -57.9 NC_004684.1 + 37722 0.66 0.569272
Target:  5'- cGCGGuCUGGUCGgccGCGCGcAgGAGCa- -3'
miRNA:   3'- aCGUC-GACCGGUa--CGUGC-UgCUCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.