miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19083 3' -60.1 NC_004684.1 + 54514 0.66 0.53657
Target:  5'- uACcGCGCUcaccggcgggggUACGAGCGccGUGAGGaCCg -3'
miRNA:   3'- -UGuCGCGG------------AUGCUCGCacCGCUCC-GG- -5'
19083 3' -60.1 NC_004684.1 + 45214 0.66 0.53657
Target:  5'- gGCAGCGCguccaUGCG-GCGcuUGGUGcuggucAGGCCc -3'
miRNA:   3'- -UGUCGCGg----AUGCuCGC--ACCGC------UCCGG- -5'
19083 3' -60.1 NC_004684.1 + 25575 0.66 0.53657
Target:  5'- cCAGCGCCUccgggugguccACGAagaacgucgGCGUcGGCaccuGGCCg -3'
miRNA:   3'- uGUCGCGGA-----------UGCU---------CGCA-CCGcu--CCGG- -5'
19083 3' -60.1 NC_004684.1 + 27714 0.66 0.53657
Target:  5'- uCGGCgGCCgagcGCGAGCacgaGGCacgcgGAGGCCg -3'
miRNA:   3'- uGUCG-CGGa---UGCUCGca--CCG-----CUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 4829 0.66 0.53657
Target:  5'- -aAGCucgGCCUGaagcugGAGCGUGGCGcgaacaAGGUCu -3'
miRNA:   3'- ugUCG---CGGAUg-----CUCGCACCGC------UCCGG- -5'
19083 3' -60.1 NC_004684.1 + 22703 0.66 0.53657
Target:  5'- gGCGGCGCa---GGaCGUGGCcaAGGCCg -3'
miRNA:   3'- -UGUCGCGgaugCUcGCACCGc-UCCGG- -5'
19083 3' -60.1 NC_004684.1 + 55713 0.66 0.53555
Target:  5'- cGCAGCuGCUUGCGcggcggucacguuGGCcgccgugcUGGCGuGGCCg -3'
miRNA:   3'- -UGUCG-CGGAUGC-------------UCGc-------ACCGCuCCGG- -5'
19083 3' -60.1 NC_004684.1 + 9894 0.66 0.5264
Target:  5'- aGCAGgcCGCCgACGAGUGguccgGGCugaccGAGGCg -3'
miRNA:   3'- -UGUC--GCGGaUGCUCGCa----CCG-----CUCCGg -5'
19083 3' -60.1 NC_004684.1 + 49502 0.66 0.5264
Target:  5'- aGCGGCGCgU-CGGGgGUGuaGcGGCCc -3'
miRNA:   3'- -UGUCGCGgAuGCUCgCACcgCuCCGG- -5'
19083 3' -60.1 NC_004684.1 + 36220 0.66 0.5264
Target:  5'- cGCAGCGuggccaCCgcCGAGacCGcUGGCGuGGCCa -3'
miRNA:   3'- -UGUCGC------GGauGCUC--GC-ACCGCuCCGG- -5'
19083 3' -60.1 NC_004684.1 + 43413 0.66 0.5264
Target:  5'- cGCcGcCGCCgaaccCGAgGCccGGCGAGGCCg -3'
miRNA:   3'- -UGuC-GCGGau---GCU-CGcaCCGCUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 40315 0.66 0.5264
Target:  5'- gGCGGCgauguccacGCCUGCGgacccGGCGcUGGagauGAGGCUg -3'
miRNA:   3'- -UGUCG---------CGGAUGC-----UCGC-ACCg---CUCCGG- -5'
19083 3' -60.1 NC_004684.1 + 39302 0.66 0.525387
Target:  5'- uGCAGCucGCCUaACGAGCGccccaguUGccGCGcccAGGCCg -3'
miRNA:   3'- -UGUCG--CGGA-UGCUCGC-------AC--CGC---UCCGG- -5'
19083 3' -60.1 NC_004684.1 + 61354 0.66 0.516304
Target:  5'- aGCuGgGCC-GCGAgGCGcUGGCGgccuaaAGGCCa -3'
miRNA:   3'- -UGuCgCGGaUGCU-CGC-ACCGC------UCCGG- -5'
19083 3' -60.1 NC_004684.1 + 18626 0.66 0.516304
Target:  5'- cCGGCGUCgGCaaguccAGCGUGGCGcuggacauGGCCu -3'
miRNA:   3'- uGUCGCGGaUGc-----UCGCACCGCu-------CCGG- -5'
19083 3' -60.1 NC_004684.1 + 66490 0.66 0.516304
Target:  5'- gGCGGCuagGCCUugGcGGCGgccucGCG-GGCCg -3'
miRNA:   3'- -UGUCG---CGGAugC-UCGCac---CGCuCCGG- -5'
19083 3' -60.1 NC_004684.1 + 10792 0.66 0.516304
Target:  5'- gACGGCGUCggcacCGuAGCGgcauccGGCGgcuGGGCCg -3'
miRNA:   3'- -UGUCGCGGau---GC-UCGCa-----CCGC---UCCGG- -5'
19083 3' -60.1 NC_004684.1 + 42943 0.66 0.516304
Target:  5'- gACGGCGCUUGUGGcuGCuGUGGUuGuGGCCg -3'
miRNA:   3'- -UGUCGCGGAUGCU--CG-CACCG-CuCCGG- -5'
19083 3' -60.1 NC_004684.1 + 21945 0.66 0.516304
Target:  5'- uGCGGCcuggugaugacGCC-AUGAGCGgcGGCGAcaccgaGGCCa -3'
miRNA:   3'- -UGUCG-----------CGGaUGCUCGCa-CCGCU------CCGG- -5'
19083 3' -60.1 NC_004684.1 + 32921 0.66 0.516304
Target:  5'- gGCGGUGCCggacCGGGUGccucgGGCaggauGGGCCg -3'
miRNA:   3'- -UGUCGCGGau--GCUCGCa----CCGc----UCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.