miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19088 3' -52.3 NC_004684.1 + 4227 0.65 0.931053
Target:  5'- aCCCGGcgcgcAACCUGGUucGgagucugagccgguGCCCgGCGGa -3'
miRNA:   3'- -GGGCCau---UUGGACCA--U--------------UGGGaUGCCg -5'
19088 3' -52.3 NC_004684.1 + 22340 0.66 0.927151
Target:  5'- aCCCGGUAcaGGC--GGUGGCg--GCGGCg -3'
miRNA:   3'- -GGGCCAU--UUGgaCCAUUGggaUGCCG- -5'
19088 3' -52.3 NC_004684.1 + 63349 0.66 0.927151
Target:  5'- cCCCGGUGAccGCCcagcgcACCgaGCGGCc -3'
miRNA:   3'- -GGGCCAUU--UGGaccau-UGGgaUGCCG- -5'
19088 3' -52.3 NC_004684.1 + 6861 0.66 0.927151
Target:  5'- gCCgUGGUGGugCUGcacUGGCUCUGgGGCg -3'
miRNA:   3'- -GG-GCCAUUugGACc--AUUGGGAUgCCG- -5'
19088 3' -52.3 NC_004684.1 + 1489 0.66 0.927151
Target:  5'- gCCggaGGUGGcccGCCUGuugcgcGACCaCUACGGCg -3'
miRNA:   3'- -GGg--CCAUU---UGGACca----UUGG-GAUGCCG- -5'
19088 3' -52.3 NC_004684.1 + 11469 0.66 0.927151
Target:  5'- cCCCGGUccACCuUGGccaccAGCUCcgGCGGUa -3'
miRNA:   3'- -GGGCCAuuUGG-ACCa----UUGGGa-UGCCG- -5'
19088 3' -52.3 NC_004684.1 + 33528 0.66 0.927151
Target:  5'- gCCUGGUAGGCCgaacGAUCCUugguUGGCc -3'
miRNA:   3'- -GGGCCAUUUGGaccaUUGGGAu---GCCG- -5'
19088 3' -52.3 NC_004684.1 + 32003 0.66 0.927151
Target:  5'- aUCCGGcc-ACCaGGUuGCCCUguuGCGGg -3'
miRNA:   3'- -GGGCCauuUGGaCCAuUGGGA---UGCCg -5'
19088 3' -52.3 NC_004684.1 + 45788 0.66 0.927151
Target:  5'- aCCGGUcguAGACCUGuucgcGCUCggcgUGCGGCa -3'
miRNA:   3'- gGGCCA---UUUGGACcau--UGGG----AUGCCG- -5'
19088 3' -52.3 NC_004684.1 + 2952 0.66 0.927151
Target:  5'- gUCCGGcgcgcacaucgAGACCaucGGU-GCCCUggACGGCg -3'
miRNA:   3'- -GGGCCa----------UUUGGa--CCAuUGGGA--UGCCG- -5'
19088 3' -52.3 NC_004684.1 + 7642 0.66 0.927151
Target:  5'- gCCgUGGcGGGCgUGGUGACCgggucgGCGGCc -3'
miRNA:   3'- -GG-GCCaUUUGgACCAUUGGga----UGCCG- -5'
19088 3' -52.3 NC_004684.1 + 18248 0.66 0.925438
Target:  5'- gCCCGGUGugcgaGACCggcgacGGUAcguuccaggccgacGCCg-ACGGCg -3'
miRNA:   3'- -GGGCCAU-----UUGGa-----CCAU--------------UGGgaUGCCG- -5'
19088 3' -52.3 NC_004684.1 + 13995 0.66 0.921344
Target:  5'- gCCCGGcc-ACCUGGacacggugcagUGGCCCaacuCGGUc -3'
miRNA:   3'- -GGGCCauuUGGACC-----------AUUGGGau--GCCG- -5'
19088 3' -52.3 NC_004684.1 + 42714 0.66 0.921344
Target:  5'- gUCGGcAGGCCUGG-AACCUcaccgccguCGGCg -3'
miRNA:   3'- gGGCCaUUUGGACCaUUGGGau-------GCCG- -5'
19088 3' -52.3 NC_004684.1 + 43724 0.66 0.921344
Target:  5'- gCUGGUAuGCCUGGacauagcgcAGCgCCU-CGGCu -3'
miRNA:   3'- gGGCCAUuUGGACCa--------UUG-GGAuGCCG- -5'
19088 3' -52.3 NC_004684.1 + 54521 0.66 0.921344
Target:  5'- cCCCGGcggcGGCCUcggcGGUGGCggCCU-CGGCc -3'
miRNA:   3'- -GGGCCau--UUGGA----CCAUUG--GGAuGCCG- -5'
19088 3' -52.3 NC_004684.1 + 45531 0.66 0.921344
Target:  5'- gCUGGUuu-CCUGuGcGGCCUUGCGGg -3'
miRNA:   3'- gGGCCAuuuGGAC-CaUUGGGAUGCCg -5'
19088 3' -52.3 NC_004684.1 + 38834 0.66 0.921344
Target:  5'- aCCGGUGgcgggGugUUGGUGACCgCgauuucuucCGGCu -3'
miRNA:   3'- gGGCCAU-----UugGACCAUUGG-Gau-------GCCG- -5'
19088 3' -52.3 NC_004684.1 + 24523 0.66 0.920748
Target:  5'- gCCGGgcGugcggcgGCCUGGuUGGCCCcACcGCg -3'
miRNA:   3'- gGGCCauU-------UGGACC-AUUGGGaUGcCG- -5'
19088 3' -52.3 NC_004684.1 + 19728 0.66 0.920748
Target:  5'- aCUCGGUGAgcgcggcACCUGG-AGCgugcaguaCCUgcGCGGCc -3'
miRNA:   3'- -GGGCCAUU-------UGGACCaUUG--------GGA--UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.