miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19105 5' -64.8 NC_004684.1 + 46456 0.66 0.355729
Target:  5'- cGGCgCGGUGGgccaGGGCCaccaCGCGCuuGCCGc -3'
miRNA:   3'- -CCGgGCCACU----UCCGG----GCGUGccCGGC- -5'
19105 5' -64.8 NC_004684.1 + 34156 0.66 0.355729
Target:  5'- cGCCCuuuuuGGUGAGcguaagcaguuGGgCCGC-CGGGCUGu -3'
miRNA:   3'- cCGGG-----CCACUU-----------CCgGGCGuGCCCGGC- -5'
19105 5' -64.8 NC_004684.1 + 55465 0.66 0.355729
Target:  5'- aGCgCGGUGAAGGCCU-----GGCCGa -3'
miRNA:   3'- cCGgGCCACUUCCGGGcgugcCCGGC- -5'
19105 5' -64.8 NC_004684.1 + 27569 0.66 0.351073
Target:  5'- aGGCCCGGUGgcGuuucgcgggugguuuGCCCucaACGGGgUGg -3'
miRNA:   3'- -CCGGGCCACuuC---------------CGGGcg-UGCCCgGC- -5'
19105 5' -64.8 NC_004684.1 + 24494 0.66 0.347993
Target:  5'- cGCCgGG-GgcGGUgCCGCA-GGGCCGc -3'
miRNA:   3'- cCGGgCCaCuuCCG-GGCGUgCCCGGC- -5'
19105 5' -64.8 NC_004684.1 + 65965 0.66 0.347993
Target:  5'- cGGCCUGGaccuuGGCCCG-GCaGGCCu -3'
miRNA:   3'- -CCGGGCCacuu-CCGGGCgUGcCCGGc -5'
19105 5' -64.8 NC_004684.1 + 18092 0.66 0.347993
Target:  5'- -uCCUGGacgGcAAGGCCaccgaGCGCGaGGCCGg -3'
miRNA:   3'- ccGGGCCa--C-UUCCGGg----CGUGC-CCGGC- -5'
19105 5' -64.8 NC_004684.1 + 28110 0.66 0.347993
Target:  5'- uGGUgCGGUucGAGGCCuUGCugGuGGCCu -3'
miRNA:   3'- -CCGgGCCAc-UUCCGG-GCGugC-CCGGc -5'
19105 5' -64.8 NC_004684.1 + 50428 0.66 0.347993
Target:  5'- aGCagcaGGUGcAGGCCCGCcuuGCaGGCCu -3'
miRNA:   3'- cCGgg--CCACuUCCGGGCG---UGcCCGGc -5'
19105 5' -64.8 NC_004684.1 + 51164 0.66 0.347993
Target:  5'- -cCUCGGUGu-GGCCgaUGCGcCGGGCCa -3'
miRNA:   3'- ccGGGCCACuuCCGG--GCGU-GCCCGGc -5'
19105 5' -64.8 NC_004684.1 + 1250 0.66 0.340377
Target:  5'- cGCCCGGccccGGCCCagauGCGCuGGCUGg -3'
miRNA:   3'- cCGGGCCacuuCCGGG----CGUGcCCGGC- -5'
19105 5' -64.8 NC_004684.1 + 45827 0.66 0.340377
Target:  5'- -aCCCGGUGAcGGCCUcgGCGGucauGCCGc -3'
miRNA:   3'- ccGGGCCACUuCCGGGcgUGCC----CGGC- -5'
19105 5' -64.8 NC_004684.1 + 33482 0.66 0.340377
Target:  5'- cGGCUgCGGUGGAcgcggcggcGGCCCuguacuCGCGGGCgGu -3'
miRNA:   3'- -CCGG-GCCACUU---------CCGGGc-----GUGCCCGgC- -5'
19105 5' -64.8 NC_004684.1 + 26310 0.66 0.340377
Target:  5'- aGCUCGGcc-AGG-CCGC-CGGGCCGc -3'
miRNA:   3'- cCGGGCCacuUCCgGGCGuGCCCGGC- -5'
19105 5' -64.8 NC_004684.1 + 11609 0.66 0.340377
Target:  5'- -aCCCGGUcacgccgccaucGAAGGCUcauuCGUcguccucuGCGGGCCGg -3'
miRNA:   3'- ccGGGCCA------------CUUCCGG----GCG--------UGCCCGGC- -5'
19105 5' -64.8 NC_004684.1 + 57268 0.66 0.339622
Target:  5'- cGGCCCGcacagcucggccuGUGAcGGCgagCCGCACcccGGCCa -3'
miRNA:   3'- -CCGGGC-------------CACUuCCG---GGCGUGc--CCGGc -5'
19105 5' -64.8 NC_004684.1 + 56705 0.66 0.338116
Target:  5'- gGGCCCGGgggUGAAGcuggcggugcugauGCCgcgccaGCACGGGaaCCGg -3'
miRNA:   3'- -CCGGGCC---ACUUC--------------CGGg-----CGUGCCC--GGC- -5'
19105 5' -64.8 NC_004684.1 + 44435 0.66 0.332883
Target:  5'- cGGCCCGGUGgcGuagucgaccaGCUugaGCACGcuGGCCa -3'
miRNA:   3'- -CCGGGCCACuuC----------CGGg--CGUGC--CCGGc -5'
19105 5' -64.8 NC_004684.1 + 56464 0.66 0.332883
Target:  5'- aGGCCUGGagcacGAGgccaaacugcucGGCCUGUACGcGCCGa -3'
miRNA:   3'- -CCGGGCCa----CUU------------CCGGGCGUGCcCGGC- -5'
19105 5' -64.8 NC_004684.1 + 361 0.66 0.332883
Target:  5'- aGCUCGGUGGccAGGCCauCGUGGuGCCGg -3'
miRNA:   3'- cCGGGCCACU--UCCGGgcGUGCC-CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.