miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19106 3' -55 NC_004684.1 + 54270 0.65 0.787626
Target:  5'- cGugGAGaAGCUGCCgcgcuggccgGUggGGCGGCg- -3'
miRNA:   3'- -CugCUU-UUGGCGGa---------CGuuCCGUCGgg -5'
19106 3' -55 NC_004684.1 + 55543 0.65 0.787626
Target:  5'- cACGAAcucgcgccgcuGGCCGCCgugGCccGGUGGCCg -3'
miRNA:   3'- cUGCUU-----------UUGGCGGa--CGuuCCGUCGGg -5'
19106 3' -55 NC_004684.1 + 40356 0.65 0.787626
Target:  5'- uGGCGGcgGCCuuggccuuggggGCCUcgGCGGuGGCGGCCUu -3'
miRNA:   3'- -CUGCUuuUGG------------CGGA--CGUU-CCGUCGGG- -5'
19106 3' -55 NC_004684.1 + 13969 0.65 0.787626
Target:  5'- uGACGgcAGUCGCgCgGCGcAGGCcAGCCCg -3'
miRNA:   3'- -CUGCuuUUGGCG-GaCGU-UCCG-UCGGG- -5'
19106 3' -55 NC_004684.1 + 14039 0.65 0.787626
Target:  5'- gGGCGAc--CCGaCCaGCAAGGCGGUg- -3'
miRNA:   3'- -CUGCUuuuGGC-GGaCGUUCCGUCGgg -5'
19106 3' -55 NC_004684.1 + 49039 0.65 0.787626
Target:  5'- aGCGGcaccgcGCCGCCggucgGCuccgGGGGCGGCaCCg -3'
miRNA:   3'- cUGCUuu----UGGCGGa----CG----UUCCGUCG-GG- -5'
19106 3' -55 NC_004684.1 + 4584 0.65 0.787626
Target:  5'- -cUGAAAGcucccCCGCCUGCccGGCAaCCCc -3'
miRNA:   3'- cuGCUUUU-----GGCGGACGuuCCGUcGGG- -5'
19106 3' -55 NC_004684.1 + 38735 0.65 0.786644
Target:  5'- uGCGuc-ACCGCCgucucgcgGCAccggaacGGGUAGUCCa -3'
miRNA:   3'- cUGCuuuUGGCGGa-------CGU-------UCCGUCGGG- -5'
19106 3' -55 NC_004684.1 + 8690 0.66 0.781713
Target:  5'- uGGCGcAGACCGCCUaCGAcgacgaggacuccauGGCGGCgCu -3'
miRNA:   3'- -CUGCuUUUGGCGGAcGUU---------------CCGUCGgG- -5'
19106 3' -55 NC_004684.1 + 62505 0.66 0.777741
Target:  5'- uGGCGAccAGGCCGCCUGa---GCcGCCUu -3'
miRNA:   3'- -CUGCU--UUUGGCGGACguucCGuCGGG- -5'
19106 3' -55 NC_004684.1 + 20624 0.66 0.777741
Target:  5'- cGACGGuuccugcGCCGCCUGCGuccGCAcGCUg -3'
miRNA:   3'- -CUGCUuu-----UGGCGGACGUuc-CGU-CGGg -5'
19106 3' -55 NC_004684.1 + 14602 0.66 0.777741
Target:  5'- cGAgGAGAACCGCCaGCGccucuacgaggaGGGCGucaacgacugcGCCa -3'
miRNA:   3'- -CUgCUUUUGGCGGaCGU------------UCCGU-----------CGGg -5'
19106 3' -55 NC_004684.1 + 26428 0.66 0.777741
Target:  5'- aGCGggGuUCGCC-GCc-GGUGGCCCg -3'
miRNA:   3'- cUGCuuUuGGCGGaCGuuCCGUCGGG- -5'
19106 3' -55 NC_004684.1 + 27339 0.66 0.777741
Target:  5'- cGGCGGu-AUCGCCguggGCAccGGCAugauGCCCa -3'
miRNA:   3'- -CUGCUuuUGGCGGa---CGUu-CCGU----CGGG- -5'
19106 3' -55 NC_004684.1 + 59797 0.66 0.776744
Target:  5'- aGGCGAAcACCGCCaGCAugucgcucagcauGGcGCGGUgCCg -3'
miRNA:   3'- -CUGCUUuUGGCGGaCGU-------------UC-CGUCG-GG- -5'
19106 3' -55 NC_004684.1 + 3526 0.66 0.767706
Target:  5'- cGAUGAAGGCCGCCacgcgcGCAcguGGCA-CCg -3'
miRNA:   3'- -CUGCUUUUGGCGGa-----CGUu--CCGUcGGg -5'
19106 3' -55 NC_004684.1 + 41442 0.66 0.767706
Target:  5'- cGGCGGu-GCCGCCggugucaGUggGGCuGaCCCc -3'
miRNA:   3'- -CUGCUuuUGGCGGa------CGuuCCGuC-GGG- -5'
19106 3' -55 NC_004684.1 + 28589 0.66 0.767706
Target:  5'- aGGCGGGcACCGCC-GCu-GGaaauGCCCa -3'
miRNA:   3'- -CUGCUUuUGGCGGaCGuuCCgu--CGGG- -5'
19106 3' -55 NC_004684.1 + 10369 0.66 0.767706
Target:  5'- cGCGAGAucgcgcgcACCGCCggGUAccAGGCcGCCa -3'
miRNA:   3'- cUGCUUU--------UGGCGGa-CGU--UCCGuCGGg -5'
19106 3' -55 NC_004684.1 + 1550 0.66 0.767706
Target:  5'- aGCGGcccccacAACCGCCUGCugauGGUGcGCCUg -3'
miRNA:   3'- cUGCUu------UUGGCGGACGuu--CCGU-CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.