miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19110 5' -56.5 NC_004684.1 + 40016 0.66 0.732841
Target:  5'- aCGCgCUCCgGCGCGAUgguGGCCuuggGCAucauGCCGg -3'
miRNA:   3'- -GCG-GAGGgCGUGCUG---UUGG----UGU----UGGU- -5'
19110 5' -56.5 NC_004684.1 + 10017 0.66 0.732841
Target:  5'- gGaCCUgCCGCGCGcCGACCGgGAgCGc -3'
miRNA:   3'- gC-GGAgGGCGUGCuGUUGGUgUUgGU- -5'
19110 5' -56.5 NC_004684.1 + 57264 0.66 0.726638
Target:  5'- cCGUCggCCCGCacagcucggccugugACGGCgAGCCGCAccccgGCCAg -3'
miRNA:   3'- -GCGGa-GGGCG---------------UGCUG-UUGGUGU-----UGGU- -5'
19110 5' -56.5 NC_004684.1 + 56734 0.66 0.722486
Target:  5'- uGCCgcgCCaGCACGGgAACCGgcACCAg -3'
miRNA:   3'- gCGGa--GGgCGUGCUgUUGGUguUGGU- -5'
19110 5' -56.5 NC_004684.1 + 3891 0.66 0.722486
Target:  5'- gGCCgcCCUGCugGcGCAGgCGCAGCUg -3'
miRNA:   3'- gCGGa-GGGCGugC-UGUUgGUGUUGGu -5'
19110 5' -56.5 NC_004684.1 + 61485 0.66 0.722486
Target:  5'- aGCCggUCgUGCGCGAuCAgcGCCGCcGCCAc -3'
miRNA:   3'- gCGG--AGgGCGUGCU-GU--UGGUGuUGGU- -5'
19110 5' -56.5 NC_004684.1 + 2864 0.66 0.722486
Target:  5'- cCGCCgagCCGCugGGCGucaucgguGCCuggugGCAGCCGu -3'
miRNA:   3'- -GCGGag-GGCGugCUGU--------UGG-----UGUUGGU- -5'
19110 5' -56.5 NC_004684.1 + 3839 0.66 0.722486
Target:  5'- gGCgUgCCGaC-CGACGACCAC-ACCGa -3'
miRNA:   3'- gCGgAgGGC-GuGCUGUUGGUGuUGGU- -5'
19110 5' -56.5 NC_004684.1 + 64414 0.66 0.722486
Target:  5'- gGCCUcgaaCCCGUugGcCAcCCGCAACa- -3'
miRNA:   3'- gCGGA----GGGCGugCuGUuGGUGUUGgu -5'
19110 5' -56.5 NC_004684.1 + 19642 0.66 0.722486
Target:  5'- gCGCgUCCgGCcaacGCGcaacACAACCACAcCCAc -3'
miRNA:   3'- -GCGgAGGgCG----UGC----UGUUGGUGUuGGU- -5'
19110 5' -56.5 NC_004684.1 + 61607 0.66 0.722486
Target:  5'- gGCgUCCCGCcCGcACAccacgcACUugGGCCAg -3'
miRNA:   3'- gCGgAGGGCGuGC-UGU------UGGugUUGGU- -5'
19110 5' -56.5 NC_004684.1 + 52904 0.66 0.722486
Target:  5'- aGCgUCCggccaGCACGGCGgcgugGCCGCAuuCCAg -3'
miRNA:   3'- gCGgAGGg----CGUGCUGU-----UGGUGUu-GGU- -5'
19110 5' -56.5 NC_004684.1 + 10580 0.66 0.722486
Target:  5'- cCGCCgaUCCggcugguucggCGCGCGAgGugCGCAACUg -3'
miRNA:   3'- -GCGG--AGG-----------GCGUGCUgUugGUGUUGGu -5'
19110 5' -56.5 NC_004684.1 + 1697 0.66 0.721445
Target:  5'- gGCCcgaaCCUGCACcuGGCAggcaccggccaguGCCGCGACCu -3'
miRNA:   3'- gCGGa---GGGCGUG--CUGU-------------UGGUGUUGGu -5'
19110 5' -56.5 NC_004684.1 + 9506 0.66 0.716231
Target:  5'- --aCUCCCGUACGAgcugcgccagcucucCGACCGCGAgCu -3'
miRNA:   3'- gcgGAGGGCGUGCU---------------GUUGGUGUUgGu -5'
19110 5' -56.5 NC_004684.1 + 1797 0.66 0.712044
Target:  5'- aCGCCg-CCGUGCGGCucauGACCGaGGCCAu -3'
miRNA:   3'- -GCGGagGGCGUGCUG----UUGGUgUUGGU- -5'
19110 5' -56.5 NC_004684.1 + 62160 0.66 0.712044
Target:  5'- gGCCUUgCGCAgGGCucgcguGACC-CGGCCGa -3'
miRNA:   3'- gCGGAGgGCGUgCUG------UUGGuGUUGGU- -5'
19110 5' -56.5 NC_004684.1 + 11752 0.66 0.712044
Target:  5'- -uCCUCCaCGCACGcCAGCCGaAAUCGc -3'
miRNA:   3'- gcGGAGG-GCGUGCuGUUGGUgUUGGU- -5'
19110 5' -56.5 NC_004684.1 + 7310 0.66 0.712044
Target:  5'- gGCCcggugaaggCCCGCACGG--GCCGCcgGGCCGc -3'
miRNA:   3'- gCGGa--------GGGCGUGCUguUGGUG--UUGGU- -5'
19110 5' -56.5 NC_004684.1 + 18479 0.66 0.712044
Target:  5'- gGCCUgcggaCCCGCACGugcugaacuCGGCCACGuUCGg -3'
miRNA:   3'- gCGGA-----GGGCGUGCu--------GUUGGUGUuGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.