miRNA display CGI


Results 1 - 20 of 407 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19114 5' -58.7 NC_004684.1 + 55440 0.66 0.627033
Target:  5'- cGUGCGCCGGugguCUauGUCGCCAAgcgcggugaaggccuGGCCGa -3'
miRNA:   3'- -CGCGUGGUU----GGgcCAGUGGUU---------------CCGGC- -5'
19114 5' -58.7 NC_004684.1 + 20242 0.66 0.622809
Target:  5'- gGCGCGCCGguacuacuuccgGCCCGG-CGCguucccGGCCc -3'
miRNA:   3'- -CGCGUGGU------------UGGGCCaGUGguu---CCGGc -5'
19114 5' -58.7 NC_004684.1 + 22149 0.66 0.622809
Target:  5'- -aGCGCUGGCugCCGGgccugaccagCACCAAGcGCCGc -3'
miRNA:   3'- cgCGUGGUUG--GGCCa---------GUGGUUC-CGGC- -5'
19114 5' -58.7 NC_004684.1 + 37545 0.66 0.622809
Target:  5'- gGCGaugaccCGCCGguggACCCGGUgUACCGGGaGCUGg -3'
miRNA:   3'- -CGC------GUGGU----UGGGCCA-GUGGUUC-CGGC- -5'
19114 5' -58.7 NC_004684.1 + 58446 0.66 0.622809
Target:  5'- cCGUGCCgGACCCGacugccCGCUGAGGCCa -3'
miRNA:   3'- cGCGUGG-UUGGGCca----GUGGUUCCGGc -5'
19114 5' -58.7 NC_004684.1 + 42786 0.66 0.622809
Target:  5'- aGCG-GCCuGCCgGGcCuCCAGGGCCu -3'
miRNA:   3'- -CGCgUGGuUGGgCCaGuGGUUCCGGc -5'
19114 5' -58.7 NC_004684.1 + 9033 0.66 0.622809
Target:  5'- gGCGgcaACCGGCgCGGcaaCGCCAgcaGGGCCa -3'
miRNA:   3'- -CGCg--UGGUUGgGCCa--GUGGU---UCCGGc -5'
19114 5' -58.7 NC_004684.1 + 1025 0.66 0.622809
Target:  5'- --uCACCcccaacACCCGcGUCGCCcuGGCCGc -3'
miRNA:   3'- cgcGUGGu-----UGGGC-CAGUGGuuCCGGC- -5'
19114 5' -58.7 NC_004684.1 + 12960 0.66 0.622809
Target:  5'- gGUGCucccGCCGACCggCGGcaggcaaCACCGAGcGCCGg -3'
miRNA:   3'- -CGCG----UGGUUGG--GCCa------GUGGUUC-CGGC- -5'
19114 5' -58.7 NC_004684.1 + 2417 0.66 0.622809
Target:  5'- -gGCACCGuuccagaCCGG-CGaCAAGGCCGa -3'
miRNA:   3'- cgCGUGGUug-----GGCCaGUgGUUCCGGC- -5'
19114 5' -58.7 NC_004684.1 + 29732 0.66 0.622809
Target:  5'- gGCGCACCGggucgaugccugACCgGGcgGCCAuGGCCn -3'
miRNA:   3'- -CGCGUGGU------------UGGgCCagUGGUuCCGGc -5'
19114 5' -58.7 NC_004684.1 + 47608 0.66 0.622809
Target:  5'- gGCcCGCCAucuugucgccCCCGGcgggCACCGgcAGGCCGc -3'
miRNA:   3'- -CGcGUGGUu---------GGGCCa---GUGGU--UCCGGC- -5'
19114 5' -58.7 NC_004684.1 + 284 0.66 0.622809
Target:  5'- cGUGCACaccuGGCacaagaguucgCUGGcCGCCGAGGCCa -3'
miRNA:   3'- -CGCGUGg---UUG-----------GGCCaGUGGUUCCGGc -5'
19114 5' -58.7 NC_004684.1 + 63213 0.66 0.622809
Target:  5'- cCGCGCCcGCCgGG-CGCaaccGGGCCa -3'
miRNA:   3'- cGCGUGGuUGGgCCaGUGgu--UCCGGc -5'
19114 5' -58.7 NC_004684.1 + 3385 0.66 0.622809
Target:  5'- aGCGCGgCAagcGCCUGGagACCGccGCCa -3'
miRNA:   3'- -CGCGUgGU---UGGGCCagUGGUucCGGc -5'
19114 5' -58.7 NC_004684.1 + 34198 0.66 0.622809
Target:  5'- cCGuCGCCAugGCCaCGGUgacgaccuUGCCGAGGUCGa -3'
miRNA:   3'- cGC-GUGGU--UGG-GCCA--------GUGGUUCCGGC- -5'
19114 5' -58.7 NC_004684.1 + 10528 0.66 0.619642
Target:  5'- cGCGCACCGcuCgCCGGUaGCUucaucgucggcgggGAGGCCc -3'
miRNA:   3'- -CGCGUGGUu-G-GGCCAgUGG--------------UUCCGGc -5'
19114 5' -58.7 NC_004684.1 + 14462 0.66 0.618587
Target:  5'- cGCaGCGCCuGCCUGGaaugcggccacgcCGCCGugcuGGCCGg -3'
miRNA:   3'- -CG-CGUGGuUGGGCCa------------GUGGUu---CCGGC- -5'
19114 5' -58.7 NC_004684.1 + 19763 0.66 0.612257
Target:  5'- uGCGCgGCCug-CCGGUgccCGCCGGGGgCGa -3'
miRNA:   3'- -CGCG-UGGuugGGCCA---GUGGUUCCgGC- -5'
19114 5' -58.7 NC_004684.1 + 60695 0.66 0.612257
Target:  5'- uCGCGCCGACgguggCCaGGUCgACCugugcAGGCCa -3'
miRNA:   3'- cGCGUGGUUG-----GG-CCAG-UGGu----UCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.