miRNA display CGI


Results 1 - 20 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19119 5' -61.8 NC_004684.1 + 20376 0.66 0.473136
Target:  5'- aAGGCCAgucguuccccgacgGCaCCCgguugaacaccuuccGCAUCGGGUACuGGUg -3'
miRNA:   3'- -UCCGGU--------------UGcGGG---------------CGUGGCCCAUG-CCG- -5'
19119 5' -61.8 NC_004684.1 + 28355 0.66 0.472185
Target:  5'- cAGGCCAcCGUCU--ACCGGGUGuccugggagcUGGCc -3'
miRNA:   3'- -UCCGGUuGCGGGcgUGGCCCAU----------GCCG- -5'
19119 5' -61.8 NC_004684.1 + 27942 0.66 0.472185
Target:  5'- -cGCCGGaGCUgGCACCGuGGUACGucGCc -3'
miRNA:   3'- ucCGGUUgCGGgCGUGGC-CCAUGC--CG- -5'
19119 5' -61.8 NC_004684.1 + 50444 0.66 0.472185
Target:  5'- -cGCCGauaaGCGCauauCCGUACCaGGUGgGGCu -3'
miRNA:   3'- ucCGGU----UGCG----GGCGUGGcCCAUgCCG- -5'
19119 5' -61.8 NC_004684.1 + 39023 0.66 0.472185
Target:  5'- uGGCCAGCuCCCaggaCACCcGGUagACGGUg -3'
miRNA:   3'- uCCGGUUGcGGGc---GUGGcCCA--UGCCG- -5'
19119 5' -61.8 NC_004684.1 + 37696 0.66 0.472185
Target:  5'- uGGCCcacgacguuGACGCgCGCACgCGcGGUcugguCGGCc -3'
miRNA:   3'- uCCGG---------UUGCGgGCGUG-GC-CCAu----GCCG- -5'
19119 5' -61.8 NC_004684.1 + 11799 0.66 0.472185
Target:  5'- cAGGCCAccguggagaaggGCGCgagCGCGCCGcuGUcCGGCg -3'
miRNA:   3'- -UCCGGU------------UGCGg--GCGUGGCc-CAuGCCG- -5'
19119 5' -61.8 NC_004684.1 + 5296 0.66 0.472185
Target:  5'- -cGCCAGCGCCagcuacgacgaCGCGCUGGcgaccGUGCaGCa -3'
miRNA:   3'- ucCGGUUGCGG-----------GCGUGGCC-----CAUGcCG- -5'
19119 5' -61.8 NC_004684.1 + 47529 0.66 0.472185
Target:  5'- uGGCgCGuUGUCUGCACCacGGUgcGCGGCa -3'
miRNA:   3'- uCCG-GUuGCGGGCGUGGc-CCA--UGCCG- -5'
19119 5' -61.8 NC_004684.1 + 36778 0.66 0.472185
Target:  5'- cGGUCAcucccucgaagaACGCCCaCACgCGGG--CGGCg -3'
miRNA:   3'- uCCGGU------------UGCGGGcGUG-GCCCauGCCG- -5'
19119 5' -61.8 NC_004684.1 + 45655 0.66 0.472185
Target:  5'- cGGCCGACcaucuGCgCGUagagguuuuuugACCGGGUA-GGCc -3'
miRNA:   3'- uCCGGUUG-----CGgGCG------------UGGCCCAUgCCG- -5'
19119 5' -61.8 NC_004684.1 + 13988 0.66 0.472185
Target:  5'- cAGGCCAGC-CCgGcCACCuGGacACGGUg -3'
miRNA:   3'- -UCCGGUUGcGGgC-GUGGcCCa-UGCCG- -5'
19119 5' -61.8 NC_004684.1 + 53791 0.66 0.472185
Target:  5'- cGGCgCGGCGCUgGgAUCGGGUugcgccuccauGCGGg -3'
miRNA:   3'- uCCG-GUUGCGGgCgUGGCCCA-----------UGCCg -5'
19119 5' -61.8 NC_004684.1 + 47339 0.66 0.471236
Target:  5'- cGGCCAcgaACGCguucaCCGCGCUgauggcgGGGUcuucaggcaccACGGCc -3'
miRNA:   3'- uCCGGU---UGCG-----GGCGUGG-------CCCA-----------UGCCG- -5'
19119 5' -61.8 NC_004684.1 + 65041 0.66 0.471236
Target:  5'- cGGCCAcgaacucAgGgCgGCAguCCGGGUagACGGCg -3'
miRNA:   3'- uCCGGU-------UgCgGgCGU--GGCCCA--UGCCG- -5'
19119 5' -61.8 NC_004684.1 + 27046 0.66 0.468393
Target:  5'- aAGGCCGcCGCCagcgaccugcccaGCGCCGaGGU-CGuGCc -3'
miRNA:   3'- -UCCGGUuGCGGg------------CGUGGC-CCAuGC-CG- -5'
19119 5' -61.8 NC_004684.1 + 24631 0.66 0.467448
Target:  5'- cAGGCCAACGUCuacgcguuccggcgCGCACUGcacuucgccgACGGCg -3'
miRNA:   3'- -UCCGGUUGCGG--------------GCGUGGCcca-------UGCCG- -5'
19119 5' -61.8 NC_004684.1 + 61258 0.66 0.466504
Target:  5'- aGGGCCAugGCggcggugucgggauuCgacagcUGCGCCGGGUcgauuucCGGCa -3'
miRNA:   3'- -UCCGGUugCG---------------G------GCGUGGCCCAu------GCCG- -5'
19119 5' -61.8 NC_004684.1 + 22818 0.66 0.463676
Target:  5'- uGGCCAcuacguccuGCcugacccgaucaccgGCCUGCcgACCGGGUucguccgggccaccACGGCg -3'
miRNA:   3'- uCCGGU---------UG---------------CGGGCG--UGGCCCA--------------UGCCG- -5'
19119 5' -61.8 NC_004684.1 + 2995 0.66 0.462736
Target:  5'- gAGGCCAucaccGCGCCgUGCACaCaGGUGCugaucaccgaggGGCc -3'
miRNA:   3'- -UCCGGU-----UGCGG-GCGUG-GcCCAUG------------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.