miRNA display CGI


Results 1 - 20 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19122 3' -57.1 NC_004684.1 + 5721 0.66 0.705574
Target:  5'- cGCGcCGCAgaugcCGUucGCCauccacaaGUGGACGGCCa -3'
miRNA:   3'- aCGC-GCGUa----GCAc-CGG--------CACCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 65201 0.66 0.705574
Target:  5'- --gGCGUA--GUGGCCGUGcGGC-ACCu -3'
miRNA:   3'- acgCGCGUagCACCGGCAC-CUGuUGG- -5'
19122 3' -57.1 NC_004684.1 + 21490 0.66 0.695076
Target:  5'- aGCGCaccaaCAUCGUGuucGCCGccagcgUGGACGGCg -3'
miRNA:   3'- aCGCGc----GUAGCAC---CGGC------ACCUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 2403 0.66 0.695076
Target:  5'- gGCGUGCAcgUCGUGGCacCGUuccagaccgGcGACAagGCCg -3'
miRNA:   3'- aCGCGCGU--AGCACCG--GCA---------C-CUGU--UGG- -5'
19122 3' -57.1 NC_004684.1 + 46938 0.66 0.695076
Target:  5'- gGUGCGCAgcaucuUCGccGCCGUGcACAGCg -3'
miRNA:   3'- aCGCGCGU------AGCacCGGCACcUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 11859 0.66 0.695076
Target:  5'- gGCGCGaguUCGUGGuuGUccgcucauGG-UAACCa -3'
miRNA:   3'- aCGCGCgu-AGCACCggCA--------CCuGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 65708 0.66 0.695076
Target:  5'- aUGCGCGCcagcucGGCCugGUGGGCGaaaaacGCCa -3'
miRNA:   3'- -ACGCGCGuagca-CCGG--CACCUGU------UGG- -5'
19122 3' -57.1 NC_004684.1 + 10233 0.66 0.695076
Target:  5'- gGUGCGCGagcaGcUGGCCGUgcgcguggagcGGGcCAACCa -3'
miRNA:   3'- aCGCGCGUag--C-ACCGGCA-----------CCU-GUUGG- -5'
19122 3' -57.1 NC_004684.1 + 38872 0.66 0.695076
Target:  5'- cGCGCGguUCaacGCCGccacgcUGGACAGCg -3'
miRNA:   3'- aCGCGCguAGcacCGGC------ACCUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 50015 0.66 0.690861
Target:  5'- gUGUGCGCAccgucggcggcagCGUGGCCGgugccUGGcuccaGGCCa -3'
miRNA:   3'- -ACGCGCGUa------------GCACCGGC-----ACCug---UUGG- -5'
19122 3' -57.1 NC_004684.1 + 11223 0.66 0.684521
Target:  5'- aGCGcCGcCGUCGUcGCCGUcGuCGGCCa -3'
miRNA:   3'- aCGC-GC-GUAGCAcCGGCAcCuGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 49544 0.66 0.684521
Target:  5'- gUGUGCGCG--GUGGCCGacuucGGGCuggcguGGCCu -3'
miRNA:   3'- -ACGCGCGUagCACCGGCa----CCUG------UUGG- -5'
19122 3' -57.1 NC_004684.1 + 25308 0.66 0.684521
Target:  5'- gGCgGCGguUCGUcGGCCcUGGcggcguaugGCGGCCu -3'
miRNA:   3'- aCG-CGCguAGCA-CCGGcACC---------UGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 7647 0.66 0.684521
Target:  5'- gGCGgGCGUgGUGaCCGggucGGCGGCCu -3'
miRNA:   3'- aCGCgCGUAgCACcGGCac--CUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 13107 0.66 0.684521
Target:  5'- aUGCGCGCAcCcccGGCCGgGuGGCGGCg -3'
miRNA:   3'- -ACGCGCGUaGca-CCGGCaC-CUGUUGg -5'
19122 3' -57.1 NC_004684.1 + 7493 0.66 0.684521
Target:  5'- gGC-CGguUCGUGcGCCGccgcaucggGGugGACCu -3'
miRNA:   3'- aCGcGCguAGCAC-CGGCa--------CCugUUGG- -5'
19122 3' -57.1 NC_004684.1 + 676 0.66 0.681345
Target:  5'- aGCGUGCGccugauccUCGgccccgaggucagccGCCgGUGGACGGCCu -3'
miRNA:   3'- aCGCGCGU--------AGCac-------------CGG-CACCUGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 16145 0.66 0.681345
Target:  5'- aUGCGCGCGUgCGgcaucgaccGGCCGaUGGcCAaggugauccugcugGCCa -3'
miRNA:   3'- -ACGCGCGUA-GCa--------CCGGC-ACCuGU--------------UGG- -5'
19122 3' -57.1 NC_004684.1 + 2875 0.66 0.673919
Target:  5'- cUGgGCGuCAUCG-GuGCCugGUGG-CAGCCg -3'
miRNA:   3'- -ACgCGC-GUAGCaC-CGG--CACCuGUUGG- -5'
19122 3' -57.1 NC_004684.1 + 52215 0.66 0.66328
Target:  5'- uUGCGaaucuccccgGCGUCGaucaGGCCGUGGu--GCCa -3'
miRNA:   3'- -ACGCg---------CGUAGCa---CCGGCACCuguUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.