Results 1 - 20 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19122 | 5' | -56.2 | NC_004684.1 | + | 29755 | 0.66 | 0.735832 |
Target: 5'- cGGG-CGGCcauggccagcGCACCGACGGCGuucgGCAUg -3' miRNA: 3'- cUCCaGCCGu---------CGUGGCUGUUGC----UGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 63564 | 0.66 | 0.735832 |
Target: 5'- -cGGUCGGCA-CGCCGA--ACG-CGCc -3' miRNA: 3'- cuCCAGCCGUcGUGGCUguUGCuGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 3828 | 0.66 | 0.735832 |
Target: 5'- uGGGcgcguUCGGC-GUGCCGAcCGACGACcACa -3' miRNA: 3'- cUCC-----AGCCGuCGUGGCU-GUUGCUG-UG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 66288 | 0.66 | 0.735832 |
Target: 5'- -cGGccacguugCGGguGC-CCGACGgcaGCGGCGCg -3' miRNA: 3'- cuCCa-------GCCguCGuGGCUGU---UGCUGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 59463 | 0.66 | 0.732722 |
Target: 5'- -cGGUCGGCGGCgauguccaccaccuGCgCGGcCAGCGGCc- -3' miRNA: 3'- cuCCAGCCGUCG--------------UG-GCU-GUUGCUGug -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 65120 | 0.66 | 0.72543 |
Target: 5'- cAGGcuggCGGCAaugcccgccgccGCGCUGAuCAGCGugGCg -3' miRNA: 3'- cUCCa---GCCGU------------CGUGGCU-GUUGCugUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 5691 | 0.66 | 0.72543 |
Target: 5'- cGGGGccCGGCcugcccacGGCACCGACGccaAUGGCGu -3' miRNA: 3'- -CUCCa-GCCG--------UCGUGGCUGU---UGCUGUg -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 20977 | 0.66 | 0.72543 |
Target: 5'- -cGGagCGGCGGCGcaggucggcCCGAUccuGCGGCGCa -3' miRNA: 3'- cuCCa-GCCGUCGU---------GGCUGu--UGCUGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 17992 | 0.66 | 0.724385 |
Target: 5'- cAGGU-GGUGGCGCUGACcgaguacGGCGGCAa -3' miRNA: 3'- cUCCAgCCGUCGUGGCUG-------UUGCUGUg -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 2504 | 0.66 | 0.724385 |
Target: 5'- uGAGGgCGGCcucaacgacgcccGGCACUgcgGACGcuGCGGCACc -3' miRNA: 3'- -CUCCaGCCG-------------UCGUGG---CUGU--UGCUGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 3189 | 0.66 | 0.723339 |
Target: 5'- cAGGUgucgaucCGGCA-CACCGGCAACGccgacguGCGCc -3' miRNA: 3'- cUCCA-------GCCGUcGUGGCUGUUGC-------UGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 22300 | 0.66 | 0.714938 |
Target: 5'- -cGG-CGGCGGUGCCGAacccCGAUGCu -3' miRNA: 3'- cuCCaGCCGUCGUGGCUguu-GCUGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 62944 | 0.66 | 0.714938 |
Target: 5'- cAGcGcgCGGCGcGCGCCGACgAugGugGCg -3' miRNA: 3'- cUC-Ca-GCCGU-CGUGGCUG-UugCugUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 33644 | 0.66 | 0.714938 |
Target: 5'- uGAGGUCGGgGGCGucCUGGCcGCGcUGCg -3' miRNA: 3'- -CUCCAGCCgUCGU--GGCUGuUGCuGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 44913 | 0.66 | 0.714938 |
Target: 5'- uGGcGUCGGUGcGCGCCGGguagucggUGGCGACGCu -3' miRNA: 3'- cUC-CAGCCGU-CGUGGCU--------GUUGCUGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 6890 | 0.66 | 0.713885 |
Target: 5'- cGAGGUCGucaaccuGguGCGCCuGC-GCGACAUc -3' miRNA: 3'- -CUCCAGC-------CguCGUGGcUGuUGCUGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 27075 | 0.66 | 0.711775 |
Target: 5'- cGAGGUCGuGCcugccgGGCgcuacgccaucgacACCaACGACGGCGCg -3' miRNA: 3'- -CUCCAGC-CG------UCG--------------UGGcUGUUGCUGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 3995 | 0.66 | 0.704367 |
Target: 5'- -cGGUCGGgAGUACCG-CuACGcCGCc -3' miRNA: 3'- cuCCAGCCgUCGUGGCuGuUGCuGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 57251 | 0.66 | 0.704367 |
Target: 5'- uGGG-CgGGCGGCACCGuCGGCccGCACa -3' miRNA: 3'- cUCCaG-CCGUCGUGGCuGUUGc-UGUG- -5' |
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19122 | 5' | -56.2 | NC_004684.1 | + | 4469 | 0.66 | 0.696926 |
Target: 5'- -uGGUCGGCuucgucaccggccagGGCcuggcccGCCGugGCAACGGCAUg -3' miRNA: 3'- cuCCAGCCG---------------UCG-------UGGC--UGUUGCUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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