miRNA display CGI


Results 1 - 20 of 287 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19143 3' -61 NC_004684.1 + 7461 0.66 0.526616
Target:  5'- cGCACGuGgGGCCGgacaccgacgcugacAagggccgguuCGUGcGCCGCCGCa -3'
miRNA:   3'- -CGUGC-CgCCGGU---------------U----------GCAC-UGGCGGCGc -5'
19143 3' -61 NC_004684.1 + 13686 0.66 0.522636
Target:  5'- aCAUGGUGGCCGguuCG-GGCaCGCCGa- -3'
miRNA:   3'- cGUGCCGCCGGUu--GCaCUG-GCGGCgc -5'
19143 3' -61 NC_004684.1 + 5461 0.66 0.522636
Target:  5'- gGCcCGGCGGgUGcCGUGGCCcgcaccCCGCGa -3'
miRNA:   3'- -CGuGCCGCCgGUuGCACUGGc-----GGCGC- -5'
19143 3' -61 NC_004684.1 + 41432 0.66 0.522636
Target:  5'- -gGCGGUGGUgCGGCGguGCCGCCGg- -3'
miRNA:   3'- cgUGCCGCCG-GUUGCacUGGCGGCgc -5'
19143 3' -61 NC_004684.1 + 5945 0.66 0.522636
Target:  5'- aGCAcCGGCGGCgaGACaauGCCGCCGg- -3'
miRNA:   3'- -CGU-GCCGCCGg-UUGcacUGGCGGCgc -5'
19143 3' -61 NC_004684.1 + 60951 0.66 0.522636
Target:  5'- uGCGCcuCGGCCAagcgcgaagGCGUucacGCCGCCGCc -3'
miRNA:   3'- -CGUGccGCCGGU---------UGCAc---UGGCGGCGc -5'
19143 3' -61 NC_004684.1 + 43269 0.66 0.522636
Target:  5'- gGUACGGCugcugcGUCGGCGUG-CCggGCUGCGg -3'
miRNA:   3'- -CGUGCCGc-----CGGUUGCACuGG--CGGCGC- -5'
19143 3' -61 NC_004684.1 + 42079 0.66 0.522636
Target:  5'- aCGCcGCcagGGCCGACGaaccGCCGCCGCc -3'
miRNA:   3'- cGUGcCG---CCGGUUGCac--UGGCGGCGc -5'
19143 3' -61 NC_004684.1 + 32543 0.66 0.522636
Target:  5'- cGCGCGGaaccgcccaCGGCUgcauGCGcagcaGACCGCCGUc -3'
miRNA:   3'- -CGUGCC---------GCCGGu---UGCa----CUGGCGGCGc -5'
19143 3' -61 NC_004684.1 + 65843 0.66 0.522636
Target:  5'- aGCA-GGCGGUUGugGgGGCCGCUGg- -3'
miRNA:   3'- -CGUgCCGCCGGUugCaCUGGCGGCgc -5'
19143 3' -61 NC_004684.1 + 16152 0.66 0.519659
Target:  5'- cGUGCGGCaucgaccggccgauGGCCAAgGUGAUC-CUGCu -3'
miRNA:   3'- -CGUGCCG--------------CCGGUUgCACUGGcGGCGc -5'
19143 3' -61 NC_004684.1 + 19310 0.66 0.512739
Target:  5'- aGCA-GGaacaGGCCGcauACGccGCCGCCGUGg -3'
miRNA:   3'- -CGUgCCg---CCGGU---UGCacUGGCGGCGC- -5'
19143 3' -61 NC_004684.1 + 2630 0.66 0.512739
Target:  5'- -gGCGGUGGCCAACGcaUGAgCGa-GCu -3'
miRNA:   3'- cgUGCCGCCGGUUGC--ACUgGCggCGc -5'
19143 3' -61 NC_004684.1 + 62652 0.66 0.512739
Target:  5'- gGCACuuGCGGCU---GUGGCCGUgCGCGa -3'
miRNA:   3'- -CGUGc-CGCCGGuugCACUGGCG-GCGC- -5'
19143 3' -61 NC_004684.1 + 50601 0.66 0.512739
Target:  5'- gGguCGGCGGUCGGCGggucAUCGgCGUGg -3'
miRNA:   3'- -CguGCCGCCGGUUGCac--UGGCgGCGC- -5'
19143 3' -61 NC_004684.1 + 7310 0.66 0.512739
Target:  5'- gGCcCGGUgaaGGCCcgcACG-GGCCGCCGgGc -3'
miRNA:   3'- -CGuGCCG---CCGGu--UGCaCUGGCGGCgC- -5'
19143 3' -61 NC_004684.1 + 52306 0.66 0.512739
Target:  5'- cCAgGGCGGCCAccGCGccgauaaGGCCGUCGa- -3'
miRNA:   3'- cGUgCCGCCGGU--UGCa------CUGGCGGCgc -5'
19143 3' -61 NC_004684.1 + 26615 0.66 0.512739
Target:  5'- -gGCGGCGucaucGCCAACGacACCGUcggCGCGg -3'
miRNA:   3'- cgUGCCGC-----CGGUUGCacUGGCG---GCGC- -5'
19143 3' -61 NC_004684.1 + 45551 0.66 0.512739
Target:  5'- uGCG-GGCGGCCAugGaugcccGGCUGaUCGCGc -3'
miRNA:   3'- -CGUgCCGCCGGUugCa-----CUGGC-GGCGC- -5'
19143 3' -61 NC_004684.1 + 54284 0.66 0.512739
Target:  5'- cGCGCuGGCcggugGGgCGGCGUGcACCG-CGCGa -3'
miRNA:   3'- -CGUG-CCG-----CCgGUUGCAC-UGGCgGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.