miRNA display CGI


Results 1 - 20 of 395 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19149 3' -63.7 NC_004684.1 + 54468 0.66 0.37714
Target:  5'- gGCGGCgaaguUGGCCGaCGgCGCaccgGCACCg -3'
miRNA:   3'- -CGUCG-----ACCGGCgGCgGCGgug-CGUGG- -5'
19149 3' -63.7 NC_004684.1 + 61523 0.66 0.37714
Target:  5'- -aGGCUGGUgcUGCCcgGCCuGCCAguCGCACg -3'
miRNA:   3'- cgUCGACCG--GCGG--CGG-CGGU--GCGUGg -5'
19149 3' -63.7 NC_004684.1 + 3545 0.66 0.37714
Target:  5'- cGCAcgUGGCaccgacagcgugCGCCG-CGCCAucCGCACCa -3'
miRNA:   3'- -CGUcgACCG------------GCGGCgGCGGU--GCGUGG- -5'
19149 3' -63.7 NC_004684.1 + 40222 0.66 0.37714
Target:  5'- cGUGGCcaGGUCGCCGCCGUagCugGUgAUCg -3'
miRNA:   3'- -CGUCGa-CCGGCGGCGGCG--GugCG-UGG- -5'
19149 3' -63.7 NC_004684.1 + 55155 0.66 0.37714
Target:  5'- cCGGaucGCCGCCGUCGggcggCACGUACCg -3'
miRNA:   3'- cGUCgacCGGCGGCGGCg----GUGCGUGG- -5'
19149 3' -63.7 NC_004684.1 + 20781 0.66 0.37714
Target:  5'- gGCGG-UGGCC-CCGaaGCCACcgGCACg -3'
miRNA:   3'- -CGUCgACCGGcGGCggCGGUG--CGUGg -5'
19149 3' -63.7 NC_004684.1 + 58727 0.66 0.37714
Target:  5'- gGCAcCUGGCCGCa-CCgGgCACGCAUg -3'
miRNA:   3'- -CGUcGACCGGCGgcGG-CgGUGCGUGg -5'
19149 3' -63.7 NC_004684.1 + 19494 0.66 0.37714
Target:  5'- -gAGCcaGCCGCUGCUGUggugggacggCACGCACUg -3'
miRNA:   3'- cgUCGacCGGCGGCGGCG----------GUGCGUGG- -5'
19149 3' -63.7 NC_004684.1 + 54845 0.66 0.37714
Target:  5'- aGCAcGCUGGCaGCaaccaggcguuUGCUGCCACGguCg -3'
miRNA:   3'- -CGU-CGACCGgCG-----------GCGGCGGUGCguGg -5'
19149 3' -63.7 NC_004684.1 + 17776 0.66 0.37714
Target:  5'- -gGGCUGGacaCCgGCCaGCCGCaACGaCGCCu -3'
miRNA:   3'- cgUCGACC---GG-CGG-CGGCGgUGC-GUGG- -5'
19149 3' -63.7 NC_004684.1 + 2724 0.66 0.37714
Target:  5'- cGUAcGCaagGuGCCGCUGCgCGCCGacaucgcggUGCGCCa -3'
miRNA:   3'- -CGU-CGa--C-CGGCGGCG-GCGGU---------GCGUGG- -5'
19149 3' -63.7 NC_004684.1 + 28843 0.66 0.37714
Target:  5'- uGCGGCgaacUGGCUG--GCCGUCACGaACCg -3'
miRNA:   3'- -CGUCG----ACCGGCggCGGCGGUGCgUGG- -5'
19149 3' -63.7 NC_004684.1 + 43104 0.66 0.376317
Target:  5'- -aGGCcgGGUCGuuGCCGUCAcccuuguCGCGCg -3'
miRNA:   3'- cgUCGa-CCGGCggCGGCGGU-------GCGUGg -5'
19149 3' -63.7 NC_004684.1 + 12770 0.66 0.372219
Target:  5'- cGCGGCUGcGCCugcggccaacGaggacaacggcacccCCGCCGaCgACGCGCCc -3'
miRNA:   3'- -CGUCGAC-CGG----------C---------------GGCGGC-GgUGCGUGG- -5'
19149 3' -63.7 NC_004684.1 + 35093 0.66 0.368963
Target:  5'- cCGGCgucaGGCacagCGCCGagCGCCAaUGCACCu -3'
miRNA:   3'- cGUCGa---CCG----GCGGCg-GCGGU-GCGUGG- -5'
19149 3' -63.7 NC_004684.1 + 26176 0.66 0.368963
Target:  5'- aGCAGCUcgcgcaCCGCUGgCGUCugGuCGCCu -3'
miRNA:   3'- -CGUCGAcc----GGCGGCgGCGGugC-GUGG- -5'
19149 3' -63.7 NC_004684.1 + 56048 0.66 0.368963
Target:  5'- -gGGcCUGGagGCCGCCGUCAagGCGCa -3'
miRNA:   3'- cgUC-GACCggCGGCGGCGGUg-CGUGg -5'
19149 3' -63.7 NC_004684.1 + 47638 0.66 0.368963
Target:  5'- cCGGCaGGCCGCgcagguacugcaCGCUccagguGCCGCGCucACCg -3'
miRNA:   3'- cGUCGaCCGGCG------------GCGG------CGGUGCG--UGG- -5'
19149 3' -63.7 NC_004684.1 + 26845 0.66 0.368963
Target:  5'- cCAGCUccuggaGGUCGCggagGUCGCCAC-CGCCg -3'
miRNA:   3'- cGUCGA------CCGGCGg---CGGCGGUGcGUGG- -5'
19149 3' -63.7 NC_004684.1 + 39890 0.66 0.368963
Target:  5'- aGCcuCUGGcCCGCCGUUcacuguaaucgGCCAUGgACCu -3'
miRNA:   3'- -CGucGACC-GGCGGCGG-----------CGGUGCgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.