miRNA display CGI


Results 1 - 20 of 292 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19155 3' -67.3 NC_004684.1 + 35186 0.66 0.290101
Target:  5'- aCCgGCUCCCGGAcguGCCGaucuGCUGGaacgaCGGCGa -3'
miRNA:   3'- -GG-CGGGGGCCU---CGGC----UGGCC-----GCCGCg -5'
19155 3' -67.3 NC_004684.1 + 47944 0.66 0.290101
Target:  5'- aCCGCCgCCCGG-GCaugGGCgcaCGGUGGUuucGCa -3'
miRNA:   3'- -GGCGG-GGGCCuCGg--CUG---GCCGCCG---CG- -5'
19155 3' -67.3 NC_004684.1 + 51579 0.66 0.290101
Target:  5'- gCGCCaCCGGGucGCuCGGCgUGGUGGUGUg -3'
miRNA:   3'- gGCGGgGGCCU--CG-GCUG-GCCGCCGCG- -5'
19155 3' -67.3 NC_004684.1 + 66336 0.66 0.290101
Target:  5'- aCGUCCCgGuGAcGCCGggGCgGGCGGCcaggGCg -3'
miRNA:   3'- gGCGGGGgC-CU-CGGC--UGgCCGCCG----CG- -5'
19155 3' -67.3 NC_004684.1 + 49694 0.66 0.290101
Target:  5'- gUGUCCagggcaCCGG-GCaCGcGCuCGGCGGCGCg -3'
miRNA:   3'- gGCGGG------GGCCuCG-GC-UG-GCCGCCGCG- -5'
19155 3' -67.3 NC_004684.1 + 48934 0.66 0.290101
Target:  5'- cCCGgCCUCGucGCCGAacggcacgUCGGCGG-GCg -3'
miRNA:   3'- -GGCgGGGGCcuCGGCU--------GGCCGCCgCG- -5'
19155 3' -67.3 NC_004684.1 + 38381 0.66 0.290101
Target:  5'- aCCaGUCCCaaGAucGCU-ACCGGCGGCGUg -3'
miRNA:   3'- -GG-CGGGGgcCU--CGGcUGGCCGCCGCG- -5'
19155 3' -67.3 NC_004684.1 + 13087 0.66 0.290101
Target:  5'- gCGCCCCgguucgcgCGGugcacGCCGccccACCGGCcaGCGCg -3'
miRNA:   3'- gGCGGGG--------GCCu----CGGC----UGGCCGc-CGCG- -5'
19155 3' -67.3 NC_004684.1 + 66520 0.66 0.290101
Target:  5'- gCCGCCUUCaGcGCgGcCCGGCGG-GCa -3'
miRNA:   3'- -GGCGGGGGcCuCGgCuGGCCGCCgCG- -5'
19155 3' -67.3 NC_004684.1 + 3115 0.66 0.290101
Target:  5'- -gGCCCaCCuugcagggggaGGGGCCGuacGCCGGggucaCGGUGCa -3'
miRNA:   3'- ggCGGG-GG-----------CCUCGGC---UGGCC-----GCCGCG- -5'
19155 3' -67.3 NC_004684.1 + 40369 0.66 0.290101
Target:  5'- -gGCCUUgGGGGCC--UCGGCGGUGg -3'
miRNA:   3'- ggCGGGGgCCUCGGcuGGCCGCCGCg -5'
19155 3' -67.3 NC_004684.1 + 55783 0.66 0.290101
Target:  5'- aCgGCCagCUCGGuGCCGucguccaggcgcACCGGCGG-GCu -3'
miRNA:   3'- -GgCGG--GGGCCuCGGC------------UGGCCGCCgCG- -5'
19155 3' -67.3 NC_004684.1 + 6611 0.66 0.290101
Target:  5'- uUCGCUCaCCGGAaCCGGCCuGGCcagGGcCGUg -3'
miRNA:   3'- -GGCGGG-GGCCUcGGCUGG-CCG---CC-GCG- -5'
19155 3' -67.3 NC_004684.1 + 43105 0.66 0.290101
Target:  5'- cUCGCCuUCCGGcAGCuCGGugauuUCGGUGGCGa -3'
miRNA:   3'- -GGCGG-GGGCC-UCG-GCU-----GGCCGCCGCg -5'
19155 3' -67.3 NC_004684.1 + 51255 0.66 0.283632
Target:  5'- -gGUUCuuGGuguugauGCCGauGCUGGCGGCGUa -3'
miRNA:   3'- ggCGGGggCCu------CGGC--UGGCCGCCGCG- -5'
19155 3' -67.3 NC_004684.1 + 30235 0.66 0.283632
Target:  5'- gCgGCCCCCGaa-CCcACCaaGGUGGCGCu -3'
miRNA:   3'- -GgCGGGGGCcucGGcUGG--CCGCCGCG- -5'
19155 3' -67.3 NC_004684.1 + 8958 0.66 0.283632
Target:  5'- -gGUCCggcaCGGGGCCGGaggcaaCGGCGGgGUu -3'
miRNA:   3'- ggCGGGg---GCCUCGGCUg-----GCCGCCgCG- -5'
19155 3' -67.3 NC_004684.1 + 32082 0.66 0.283632
Target:  5'- aCCGCgUCUGGGugagcGuuGGCCaGGCGGUGg -3'
miRNA:   3'- -GGCGgGGGCCU-----CggCUGG-CCGCCGCg -5'
19155 3' -67.3 NC_004684.1 + 60595 0.66 0.283632
Target:  5'- gCCGCgCaCGGuGCgcaGGCCGGUcacccGGCGCa -3'
miRNA:   3'- -GGCGgGgGCCuCGg--CUGGCCG-----CCGCG- -5'
19155 3' -67.3 NC_004684.1 + 25631 0.66 0.283632
Target:  5'- gCUGCCCaaCGGuguGCCguucgaGAgCGGCGGCGg -3'
miRNA:   3'- -GGCGGGg-GCCu--CGG------CUgGCCGCCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.