miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19180 3' -57.5 NC_004684.1 + 48566 0.66 0.630718
Target:  5'- gGCCUGCGCGCcgaGCuugacgauggaguuGGCCagCAGCa- -3'
miRNA:   3'- -CGGACGUGCGug-CGu-------------CCGGa-GUUGau -5'
19180 3' -57.5 NC_004684.1 + 58047 0.66 0.626364
Target:  5'- cGCCgGgACGCAcCGgAGGCCUCcuCg- -3'
miRNA:   3'- -CGGaCgUGCGU-GCgUCCGGAGuuGau -5'
19180 3' -57.5 NC_004684.1 + 39547 0.66 0.626364
Target:  5'- uGCgUGCACaGCGCGCucGGuGCC-CAGCa- -3'
miRNA:   3'- -CGgACGUG-CGUGCG--UC-CGGaGUUGau -5'
19180 3' -57.5 NC_004684.1 + 45105 0.66 0.626364
Target:  5'- aCC-GC-CGcCGCGCGGGCCUUGGCc- -3'
miRNA:   3'- cGGaCGuGC-GUGCGUCCGGAGUUGau -5'
19180 3' -57.5 NC_004684.1 + 19110 0.66 0.626364
Target:  5'- gGCCggugggacGUGCGCAUGguGGCCgaCGACa- -3'
miRNA:   3'- -CGGa-------CGUGCGUGCguCCGGa-GUUGau -5'
19180 3' -57.5 NC_004684.1 + 27375 0.66 0.626364
Target:  5'- gGUCUGCGcCGCuaACGCAGGCUgguaAGCc- -3'
miRNA:   3'- -CGGACGU-GCG--UGCGUCCGGag--UUGau -5'
19180 3' -57.5 NC_004684.1 + 60688 0.66 0.615484
Target:  5'- gGCUUGCucGCGCcgACGguGGCCaggUCGACc- -3'
miRNA:   3'- -CGGACG--UGCG--UGCguCCGG---AGUUGau -5'
19180 3' -57.5 NC_004684.1 + 4016 0.66 0.615484
Target:  5'- cGCCaucgGCugGCGCGUcGGCCgcUCGgugcGCUGg -3'
miRNA:   3'- -CGGa---CGugCGUGCGuCCGG--AGU----UGAU- -5'
19180 3' -57.5 NC_004684.1 + 59063 0.66 0.615484
Target:  5'- uUCUcGCugGCGCGCAccucuuccGGCgUCAGCg- -3'
miRNA:   3'- cGGA-CGugCGUGCGU--------CCGgAGUUGau -5'
19180 3' -57.5 NC_004684.1 + 41869 0.66 0.615484
Target:  5'- gGUCUgGUACuGgACGCAGGCCcgCGACa- -3'
miRNA:   3'- -CGGA-CGUG-CgUGCGUCCGGa-GUUGau -5'
19180 3' -57.5 NC_004684.1 + 41987 0.66 0.604619
Target:  5'- --aUGCcCGCGCGguGGCCgcuggCGACa- -3'
miRNA:   3'- cggACGuGCGUGCguCCGGa----GUUGau -5'
19180 3' -57.5 NC_004684.1 + 11175 0.66 0.604619
Target:  5'- cGCCUGCAUGCgccgcucccacaGCGUcucauccaccGGGCgCUCGAUa- -3'
miRNA:   3'- -CGGACGUGCG------------UGCG----------UCCG-GAGUUGau -5'
19180 3' -57.5 NC_004684.1 + 3679 0.66 0.604619
Target:  5'- cCCUGUugGCACGCuGGCaggagaucgcCAGCg- -3'
miRNA:   3'- cGGACGugCGUGCGuCCGga--------GUUGau -5'
19180 3' -57.5 NC_004684.1 + 15000 0.66 0.604619
Target:  5'- cGCCUGCGCGa--GCAGGUCauggUCGAg-- -3'
miRNA:   3'- -CGGACGUGCgugCGUCCGG----AGUUgau -5'
19180 3' -57.5 NC_004684.1 + 26694 0.66 0.604619
Target:  5'- aCCUGCugGUGCGCgugcugcucaAGGUgCUCGGCg- -3'
miRNA:   3'- cGGACGugCGUGCG----------UCCG-GAGUUGau -5'
19180 3' -57.5 NC_004684.1 + 37273 0.66 0.59811
Target:  5'- uGCCUGUagcucGCGCAggcguugcuccacacUGCGGGCCcauUCGGCg- -3'
miRNA:   3'- -CGGACG-----UGCGU---------------GCGUCCGG---AGUUGau -5'
19180 3' -57.5 NC_004684.1 + 45152 0.66 0.593776
Target:  5'- cGCCUGCGCGUugaucGCGCGGguGCCgUCGcGCa- -3'
miRNA:   3'- -CGGACGUGCG-----UGCGUC--CGG-AGU-UGau -5'
19180 3' -57.5 NC_004684.1 + 27083 0.66 0.593776
Target:  5'- uGCCUGC-CGgGCGCuacGCCaUCGACa- -3'
miRNA:   3'- -CGGACGuGCgUGCGuc-CGG-AGUUGau -5'
19180 3' -57.5 NC_004684.1 + 60051 0.66 0.593776
Target:  5'- gGCCUcGCACucgugGCGCGC-GGCC-CGGCg- -3'
miRNA:   3'- -CGGA-CGUG-----CGUGCGuCCGGaGUUGau -5'
19180 3' -57.5 NC_004684.1 + 37469 0.66 0.593776
Target:  5'- gGCC-GCACaGCGcCGUauaggAGGCCUCGugUAc -3'
miRNA:   3'- -CGGaCGUG-CGU-GCG-----UCCGGAGUugAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.