Results 1 - 20 of 146 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
19210 | 3' | -56.2 | NC_004684.1 | + | 10894 | 0.66 | 0.754962 |
Target: 5'- uUCAccGAC---GCGGUGAUCGCGCUg -3' miRNA: 3'- -AGUucCUGuucCGCCACUGGUGCGGg -5' |
|||||||
19210 | 3' | -56.2 | NC_004684.1 | + | 22177 | 0.66 | 0.754962 |
Target: 5'- gCAGGGcCAcGGCGGcGGCgACcGCCUu -3' miRNA: 3'- aGUUCCuGUuCCGCCaCUGgUG-CGGG- -5' |
|||||||
19210 | 3' | -56.2 | NC_004684.1 | + | 22785 | 0.66 | 0.754962 |
Target: 5'- uUCGAGGGCGuGGCuGGcGACuucaaCACGCUg -3' miRNA: 3'- -AGUUCCUGUuCCG-CCaCUG-----GUGCGGg -5' |
|||||||
19210 | 3' | -56.2 | NC_004684.1 | + | 21506 | 0.66 | 0.754962 |
Target: 5'- -uGAGGACAAGGCaccGGCCAuCGacaCCa -3' miRNA: 3'- agUUCCUGUUCCGccaCUGGU-GCg--GG- -5' |
|||||||
19210 | 3' | -56.2 | NC_004684.1 | + | 3941 | 0.66 | 0.754962 |
Target: 5'- ---cGGAacuGGGCGGcgaaggcGACCACGCUg -3' miRNA: 3'- aguuCCUgu-UCCGCCa------CUGGUGCGGg -5' |
|||||||
19210 | 3' | -56.2 | NC_004684.1 | + | 58934 | 0.66 | 0.754962 |
Target: 5'- cCGGGGACAacagccAGGCcuUGcGCCGgGCCCu -3' miRNA: 3'- aGUUCCUGU------UCCGccAC-UGGUgCGGG- -5' |
|||||||
19210 | 3' | -56.2 | NC_004684.1 | + | 14625 | 0.66 | 0.754962 |
Target: 5'- aCGAGGA--GGGCGucaacGACUGCGCCa -3' miRNA: 3'- aGUUCCUguUCCGCca---CUGGUGCGGg -5' |
|||||||
19210 | 3' | -56.2 | NC_004684.1 | + | 47920 | 0.66 | 0.754962 |
Target: 5'- cCAGGGGCGcaugucGcGCGGgccACCGcCGCCCg -3' miRNA: 3'- aGUUCCUGUu-----C-CGCCac-UGGU-GCGGG- -5' |
|||||||
19210 | 3' | -56.2 | NC_004684.1 | + | 51039 | 0.66 | 0.753954 |
Target: 5'- --cAGGAUgcGGCcaccgccGGUGACgauGCGCCCg -3' miRNA: 3'- aguUCCUGuuCCG-------CCACUGg--UGCGGG- -5' |
|||||||
19210 | 3' | -56.2 | NC_004684.1 | + | 7627 | 0.66 | 0.751936 |
Target: 5'- gUCGAGagccagcucgccguGGCGGGcGUGGUGACCGgGUCg -3' miRNA: 3'- -AGUUC--------------CUGUUC-CGCCACUGGUgCGGg -5' |
|||||||
19210 | 3' | -56.2 | NC_004684.1 | + | 14922 | 0.66 | 0.744836 |
Target: 5'- -gGAGGu---GGUGGcGGCCAUGCCg -3' miRNA: 3'- agUUCCuguuCCGCCaCUGGUGCGGg -5' |
|||||||
19210 | 3' | -56.2 | NC_004684.1 | + | 66153 | 0.66 | 0.744836 |
Target: 5'- --cGGGGCcGGGCGaccGACCAgGCCg -3' miRNA: 3'- aguUCCUGuUCCGCca-CUGGUgCGGg -5' |
|||||||
19210 | 3' | -56.2 | NC_004684.1 | + | 13679 | 0.66 | 0.744836 |
Target: 5'- gUCcAGGACAugguGGcCGGUucGGgCACGCCg -3' miRNA: 3'- -AGuUCCUGUu---CC-GCCA--CUgGUGCGGg -5' |
|||||||
19210 | 3' | -56.2 | NC_004684.1 | + | 46120 | 0.66 | 0.734602 |
Target: 5'- ---cGGGCGcgcgugccgGGGUGGuUGACCugGCgCa -3' miRNA: 3'- aguuCCUGU---------UCCGCC-ACUGGugCGgG- -5' |
|||||||
19210 | 3' | -56.2 | NC_004684.1 | + | 433 | 0.66 | 0.734602 |
Target: 5'- cCGAGGuCGAcGGCuGGggcgaGAUCGCGCCg -3' miRNA: 3'- aGUUCCuGUU-CCG-CCa----CUGGUGCGGg -5' |
|||||||
19210 | 3' | -56.2 | NC_004684.1 | + | 18140 | 0.66 | 0.734602 |
Target: 5'- aCAuGGACGcgccgcugugGGGCGacGUG-CCgACGCCCg -3' miRNA: 3'- aGUuCCUGU----------UCCGC--CACuGG-UGCGGG- -5' |
|||||||
19210 | 3' | -56.2 | NC_004684.1 | + | 38793 | 0.66 | 0.734602 |
Target: 5'- aCAAgcuGGGCAuuuccagcGGCGGUG-CC-CGCCUg -3' miRNA: 3'- aGUU---CCUGUu-------CCGCCACuGGuGCGGG- -5' |
|||||||
19210 | 3' | -56.2 | NC_004684.1 | + | 30181 | 0.66 | 0.734602 |
Target: 5'- gUCGGcGGCGAGcUGGUGGCCACcaaaCCCg -3' miRNA: 3'- -AGUUcCUGUUCcGCCACUGGUGc---GGG- -5' |
|||||||
19210 | 3' | -56.2 | NC_004684.1 | + | 15123 | 0.66 | 0.734602 |
Target: 5'- gUCAccGGGACGcuGGGCc-UGAuCCACGCCa -3' miRNA: 3'- -AGU--UCCUGU--UCCGccACU-GGUGCGGg -5' |
|||||||
19210 | 3' | -56.2 | NC_004684.1 | + | 55874 | 0.66 | 0.734602 |
Target: 5'- cCAAGGugGccgGGGCaugGACC-UGCCCg -3' miRNA: 3'- aGUUCCugU---UCCGccaCUGGuGCGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home