miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19210 3' -56.2 NC_004684.1 + 10894 0.66 0.754962
Target:  5'- uUCAccGAC---GCGGUGAUCGCGCUg -3'
miRNA:   3'- -AGUucCUGuucCGCCACUGGUGCGGg -5'
19210 3' -56.2 NC_004684.1 + 22177 0.66 0.754962
Target:  5'- gCAGGGcCAcGGCGGcGGCgACcGCCUu -3'
miRNA:   3'- aGUUCCuGUuCCGCCaCUGgUG-CGGG- -5'
19210 3' -56.2 NC_004684.1 + 22785 0.66 0.754962
Target:  5'- uUCGAGGGCGuGGCuGGcGACuucaaCACGCUg -3'
miRNA:   3'- -AGUUCCUGUuCCG-CCaCUG-----GUGCGGg -5'
19210 3' -56.2 NC_004684.1 + 21506 0.66 0.754962
Target:  5'- -uGAGGACAAGGCaccGGCCAuCGacaCCa -3'
miRNA:   3'- agUUCCUGUUCCGccaCUGGU-GCg--GG- -5'
19210 3' -56.2 NC_004684.1 + 3941 0.66 0.754962
Target:  5'- ---cGGAacuGGGCGGcgaaggcGACCACGCUg -3'
miRNA:   3'- aguuCCUgu-UCCGCCa------CUGGUGCGGg -5'
19210 3' -56.2 NC_004684.1 + 58934 0.66 0.754962
Target:  5'- cCGGGGACAacagccAGGCcuUGcGCCGgGCCCu -3'
miRNA:   3'- aGUUCCUGU------UCCGccAC-UGGUgCGGG- -5'
19210 3' -56.2 NC_004684.1 + 14625 0.66 0.754962
Target:  5'- aCGAGGA--GGGCGucaacGACUGCGCCa -3'
miRNA:   3'- aGUUCCUguUCCGCca---CUGGUGCGGg -5'
19210 3' -56.2 NC_004684.1 + 47920 0.66 0.754962
Target:  5'- cCAGGGGCGcaugucGcGCGGgccACCGcCGCCCg -3'
miRNA:   3'- aGUUCCUGUu-----C-CGCCac-UGGU-GCGGG- -5'
19210 3' -56.2 NC_004684.1 + 51039 0.66 0.753954
Target:  5'- --cAGGAUgcGGCcaccgccGGUGACgauGCGCCCg -3'
miRNA:   3'- aguUCCUGuuCCG-------CCACUGg--UGCGGG- -5'
19210 3' -56.2 NC_004684.1 + 7627 0.66 0.751936
Target:  5'- gUCGAGagccagcucgccguGGCGGGcGUGGUGACCGgGUCg -3'
miRNA:   3'- -AGUUC--------------CUGUUC-CGCCACUGGUgCGGg -5'
19210 3' -56.2 NC_004684.1 + 14922 0.66 0.744836
Target:  5'- -gGAGGu---GGUGGcGGCCAUGCCg -3'
miRNA:   3'- agUUCCuguuCCGCCaCUGGUGCGGg -5'
19210 3' -56.2 NC_004684.1 + 66153 0.66 0.744836
Target:  5'- --cGGGGCcGGGCGaccGACCAgGCCg -3'
miRNA:   3'- aguUCCUGuUCCGCca-CUGGUgCGGg -5'
19210 3' -56.2 NC_004684.1 + 13679 0.66 0.744836
Target:  5'- gUCcAGGACAugguGGcCGGUucGGgCACGCCg -3'
miRNA:   3'- -AGuUCCUGUu---CC-GCCA--CUgGUGCGGg -5'
19210 3' -56.2 NC_004684.1 + 46120 0.66 0.734602
Target:  5'- ---cGGGCGcgcgugccgGGGUGGuUGACCugGCgCa -3'
miRNA:   3'- aguuCCUGU---------UCCGCC-ACUGGugCGgG- -5'
19210 3' -56.2 NC_004684.1 + 433 0.66 0.734602
Target:  5'- cCGAGGuCGAcGGCuGGggcgaGAUCGCGCCg -3'
miRNA:   3'- aGUUCCuGUU-CCG-CCa----CUGGUGCGGg -5'
19210 3' -56.2 NC_004684.1 + 18140 0.66 0.734602
Target:  5'- aCAuGGACGcgccgcugugGGGCGacGUG-CCgACGCCCg -3'
miRNA:   3'- aGUuCCUGU----------UCCGC--CACuGG-UGCGGG- -5'
19210 3' -56.2 NC_004684.1 + 38793 0.66 0.734602
Target:  5'- aCAAgcuGGGCAuuuccagcGGCGGUG-CC-CGCCUg -3'
miRNA:   3'- aGUU---CCUGUu-------CCGCCACuGGuGCGGG- -5'
19210 3' -56.2 NC_004684.1 + 30181 0.66 0.734602
Target:  5'- gUCGGcGGCGAGcUGGUGGCCACcaaaCCCg -3'
miRNA:   3'- -AGUUcCUGUUCcGCCACUGGUGc---GGG- -5'
19210 3' -56.2 NC_004684.1 + 15123 0.66 0.734602
Target:  5'- gUCAccGGGACGcuGGGCc-UGAuCCACGCCa -3'
miRNA:   3'- -AGU--UCCUGU--UCCGccACU-GGUGCGGg -5'
19210 3' -56.2 NC_004684.1 + 55874 0.66 0.734602
Target:  5'- cCAAGGugGccgGGGCaugGACC-UGCCCg -3'
miRNA:   3'- aGUUCCugU---UCCGccaCUGGuGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.