miRNA display CGI


Results 1 - 20 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19213 3' -65.8 NC_004684.1 + 55115 0.65 0.301961
Target:  5'- cGCUGCGCagcaCGGGCCucgaugauGGUcaUGuacgugaccggaucGCCGCCg -3'
miRNA:   3'- aCGGCGCGg---GUCCGG--------CCA--AC--------------CGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 18368 0.65 0.301961
Target:  5'- aGCCuGCGCCgGuGGCCgaucuguucagcggGGUcgGGCCcgGCCa -3'
miRNA:   3'- aCGG-CGCGGgU-CCGG--------------CCAa-CCGG--CGG- -5'
19213 3' -65.8 NC_004684.1 + 12667 0.66 0.29714
Target:  5'- aGCUGCGCUC--GCUGGUggaGGCCGaCg -3'
miRNA:   3'- aCGGCGCGGGucCGGCCAa--CCGGCgG- -5'
19213 3' -65.8 NC_004684.1 + 49348 0.66 0.29714
Target:  5'- cGCUGacgggaucagGCCCAGGCUGuccaUGGCCuuGCCg -3'
miRNA:   3'- aCGGCg---------CGGGUCCGGCca--ACCGG--CGG- -5'
19213 3' -65.8 NC_004684.1 + 26802 0.66 0.296456
Target:  5'- cGuUCGaCGCCaCGGGCCGGUUGaugaacgacaccaGCgCGCUg -3'
miRNA:   3'- aC-GGC-GCGG-GUCCGGCCAAC-------------CG-GCGG- -5'
19213 3' -65.8 NC_004684.1 + 46783 0.66 0.296456
Target:  5'- cGCCgGUGCCCAGGUagacgcuCGGcgUGaGCgUGCCu -3'
miRNA:   3'- aCGG-CGCGGGUCCG-------GCCa-AC-CG-GCGG- -5'
19213 3' -65.8 NC_004684.1 + 17065 0.66 0.294412
Target:  5'- gGCCGCccGCCU-GGCCGGgcgcaccgacugGGCaCGCg -3'
miRNA:   3'- aCGGCG--CGGGuCCGGCCaa----------CCG-GCGg -5'
19213 3' -65.8 NC_004684.1 + 64183 0.66 0.290357
Target:  5'- cGCgCGCGuCCCAGGUguaGGggGuGUCGCa -3'
miRNA:   3'- aCG-GCGC-GGGUCCGg--CCaaC-CGGCGg -5'
19213 3' -65.8 NC_004684.1 + 2071 0.66 0.290357
Target:  5'- cUGCCugGCGCU--GGCCguGGUgcacagcgaGGCCGCCg -3'
miRNA:   3'- -ACGG--CGCGGguCCGG--CCAa--------CCGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 30613 0.66 0.290357
Target:  5'- cGCCGCcgaccagcgucgGCaCCGGGCgCGGcccUGGCgGCg -3'
miRNA:   3'- aCGGCG------------CG-GGUCCG-GCCa--ACCGgCGg -5'
19213 3' -65.8 NC_004684.1 + 11098 0.66 0.290357
Target:  5'- cGgCGCGCCaGGGCCGGgcugaUGCCu -3'
miRNA:   3'- aCgGCGCGGgUCCGGCCaaccgGCGG- -5'
19213 3' -65.8 NC_004684.1 + 18043 0.66 0.290357
Target:  5'- aGCCuGgGCCUgaucccgucAGcGCCGaccaUGGCCGCCg -3'
miRNA:   3'- aCGG-CgCGGG---------UC-CGGCca--ACCGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 21840 0.66 0.290357
Target:  5'- aGCCGgGCauCCAuGGCCGcccgcaaGGCCGCa -3'
miRNA:   3'- aCGGCgCG--GGU-CCGGCcaa----CCGGCGg -5'
19213 3' -65.8 NC_004684.1 + 41633 0.66 0.290357
Target:  5'- aGCCGgaCG-CCAGGCCGGggaucGcGCCGUa -3'
miRNA:   3'- aCGGC--GCgGGUCCGGCCaa---C-CGGCGg -5'
19213 3' -65.8 NC_004684.1 + 26837 0.66 0.290357
Target:  5'- gGCUuCGCCCagcuccuggAGGUCGcGgaGGUCGCCa -3'
miRNA:   3'- aCGGcGCGGG---------UCCGGC-CaaCCGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 33518 0.66 0.290357
Target:  5'- cGCCcgcacCGCCUgguAGGCCgaacgauccuuGGUUGGCC-CCg -3'
miRNA:   3'- aCGGc----GCGGG---UCCGG-----------CCAACCGGcGG- -5'
19213 3' -65.8 NC_004684.1 + 55866 0.66 0.290357
Target:  5'- cGUCGaCGCCaagguGGCCGGggcaUGGaCCuGCCc -3'
miRNA:   3'- aCGGC-GCGGgu---CCGGCCa---ACC-GG-CGG- -5'
19213 3' -65.8 NC_004684.1 + 56399 0.66 0.290357
Target:  5'- aUGCagCGCGCCaacuacCGGGCCaugcucucggGGUccaaggaGGCCGCCa -3'
miRNA:   3'- -ACG--GCGCGG------GUCCGG----------CCAa------CCGGCGG- -5'
19213 3' -65.8 NC_004684.1 + 26437 0.66 0.290357
Target:  5'- cGCCGCcggugGCCCGGuGUaCGGc-GGCaCGCCu -3'
miRNA:   3'- aCGGCG-----CGGGUC-CG-GCCaaCCG-GCGG- -5'
19213 3' -65.8 NC_004684.1 + 32752 0.66 0.288346
Target:  5'- cGUCGCGgCCGaccuGGuggcgugagcaugaCCGGgUGGCUGCCg -3'
miRNA:   3'- aCGGCGCgGGU----CC--------------GGCCaACCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.