Results 1 - 20 of 163 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19216 | 3' | -53.4 | NC_004684.1 | + | 64972 | 0.66 | 0.867137 |
Target: 5'- -aGGUCGAugaccGCGACgCGGGucugcggcuCGCCAGCg -3' miRNA: 3'- gaCUAGUUuc---CGCUG-GUCU---------GCGGUCG- -5' |
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19216 | 3' | -53.4 | NC_004684.1 | + | 58614 | 0.66 | 0.867137 |
Target: 5'- uUGAUCGAcggcccguGGCGGCUGG-UGCCGcGCu -3' miRNA: 3'- gACUAGUUu-------CCGCUGGUCuGCGGU-CG- -5' |
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19216 | 3' | -53.4 | NC_004684.1 | + | 38303 | 0.66 | 0.867137 |
Target: 5'- gUGGUCAAcGGGuCGAUCAccGAgGCCAaGCu -3' miRNA: 3'- gACUAGUU-UCC-GCUGGU--CUgCGGU-CG- -5' |
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19216 | 3' | -53.4 | NC_004684.1 | + | 36789 | 0.66 | 0.867137 |
Target: 5'- gCUGGUCGgcGGCGGCUcg--GUCAGCu -3' miRNA: 3'- -GACUAGUuuCCGCUGGucugCGGUCG- -5' |
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19216 | 3' | -53.4 | NC_004684.1 | + | 6694 | 0.66 | 0.867137 |
Target: 5'- -aGGUCGAccuGGCcACCGucGGCGCgAGCa -3' miRNA: 3'- gaCUAGUUu--CCGcUGGU--CUGCGgUCG- -5' |
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19216 | 3' | -53.4 | NC_004684.1 | + | 63364 | 0.66 | 0.867137 |
Target: 5'- -aGcgCAccGaGCGGCCGacGCGCCAGCc -3' miRNA: 3'- gaCuaGUuuC-CGCUGGUc-UGCGGUCG- -5' |
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19216 | 3' | -53.4 | NC_004684.1 | + | 24506 | 0.66 | 0.867137 |
Target: 5'- -cGGUCuc-GGUG-CCAGAgGCCGGg -3' miRNA: 3'- gaCUAGuuuCCGCuGGUCUgCGGUCg -5' |
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19216 | 3' | -53.4 | NC_004684.1 | + | 52296 | 0.66 | 0.867137 |
Target: 5'- -aGGUCGgccuccAGGGCGGCCAccGCGCCgauaaGGCc -3' miRNA: 3'- gaCUAGU------UUCCGCUGGUc-UGCGG-----UCG- -5' |
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19216 | 3' | -53.4 | NC_004684.1 | + | 65665 | 0.66 | 0.867137 |
Target: 5'- -cGGUCccGAGuaGGCCu-GCGCCAGCa -3' miRNA: 3'- gaCUAGu-UUCcgCUGGucUGCGGUCG- -5' |
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19216 | 3' | -53.4 | NC_004684.1 | + | 40308 | 0.66 | 0.864716 |
Target: 5'- -cGAUCu-GGGCGGCgauguccacgccugCGGAC-CCGGCg -3' miRNA: 3'- gaCUAGuuUCCGCUG--------------GUCUGcGGUCG- -5' |
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19216 | 3' | -53.4 | NC_004684.1 | + | 24908 | 0.66 | 0.862274 |
Target: 5'- cCUGGUCGuuggacaggaugccgAAGGUGGCCAGgaACGacagagCGGCg -3' miRNA: 3'- -GACUAGU---------------UUCCGCUGGUC--UGCg-----GUCG- -5' |
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19216 | 3' | -53.4 | NC_004684.1 | + | 29787 | 0.66 | 0.858983 |
Target: 5'- -cGG-CAuGGGCGGCCGGGCccGCaCGGUa -3' miRNA: 3'- gaCUaGUuUCCGCUGGUCUG--CG-GUCG- -5' |
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19216 | 3' | -53.4 | NC_004684.1 | + | 11148 | 0.66 | 0.858983 |
Target: 5'- gUGGUCGcgccgucGGUgGACCuGGcCGCCAGCg -3' miRNA: 3'- gACUAGUuu-----CCG-CUGGuCU-GCGGUCG- -5' |
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19216 | 3' | -53.4 | NC_004684.1 | + | 25979 | 0.66 | 0.858983 |
Target: 5'- gUGcgCGAAGGCaACCcgcuGGCGCUccuGGCg -3' miRNA: 3'- gACuaGUUUCCGcUGGu---CUGCGG---UCG- -5' |
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19216 | 3' | -53.4 | NC_004684.1 | + | 65619 | 0.66 | 0.858983 |
Target: 5'- cCUGGUU---GGCGuCCAGccacGCGCgCAGCu -3' miRNA: 3'- -GACUAGuuuCCGCuGGUC----UGCG-GUCG- -5' |
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19216 | 3' | -53.4 | NC_004684.1 | + | 64213 | 0.66 | 0.853977 |
Target: 5'- -gGAUCGAcaccuGGGacacggcguuggccuCGGCCAGGCGCUGGg -3' miRNA: 3'- gaCUAGUU-----UCC---------------GCUGGUCUGCGGUCg -5' |
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19216 | 3' | -53.4 | NC_004684.1 | + | 26035 | 0.66 | 0.850592 |
Target: 5'- -cGGUCGAugaaccGGGUGGCCuuGGC-CCGGCc -3' miRNA: 3'- gaCUAGUU------UCCGCUGGu-CUGcGGUCG- -5' |
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19216 | 3' | -53.4 | NC_004684.1 | + | 43497 | 0.66 | 0.850592 |
Target: 5'- -cGGUCGAgccgGGGCGGUCGGGa-CCAGCg -3' miRNA: 3'- gaCUAGUU----UCCGCUGGUCUgcGGUCG- -5' |
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19216 | 3' | -53.4 | NC_004684.1 | + | 65017 | 0.66 | 0.850592 |
Target: 5'- -cGG-CGAAGGUGGCCAugucGAUGgCGGCc -3' miRNA: 3'- gaCUaGUUUCCGCUGGU----CUGCgGUCG- -5' |
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19216 | 3' | -53.4 | NC_004684.1 | + | 28014 | 0.66 | 0.850592 |
Target: 5'- -aGGUCGAuGGCcugGACguGACaCCGGCa -3' miRNA: 3'- gaCUAGUUuCCG---CUGguCUGcGGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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