miRNA display CGI


Results 1 - 20 of 273 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19230 3' -59.7 NC_004684.1 + 24590 0.65 0.603958
Target:  5'- aGCACguccugaCGACaGCGGaCGUGGcGCgcaugggCGGCCa -3'
miRNA:   3'- -CGUG-------GCUGgUGCC-GCACC-UGa------GCCGG- -5'
19230 3' -59.7 NC_004684.1 + 59458 0.65 0.601887
Target:  5'- uGCGCCGGuCgGCGGCGaUGuccaccaccugcgcGGCcagCGGCCc -3'
miRNA:   3'- -CGUGGCU-GgUGCCGC-AC--------------CUGa--GCCGG- -5'
19230 3' -59.7 NC_004684.1 + 9574 0.66 0.598781
Target:  5'- aGCACCgccggGACCA-GGcCGUGGucggguucccagguCUUGGCCc -3'
miRNA:   3'- -CGUGG-----CUGGUgCC-GCACCu-------------GAGCCGG- -5'
19230 3' -59.7 NC_004684.1 + 42614 0.66 0.594645
Target:  5'- cGUAUCGACCAgCGGCccGGuGC-CGGUCu -3'
miRNA:   3'- -CGUGGCUGGU-GCCGcaCC-UGaGCCGG- -5'
19230 3' -59.7 NC_004684.1 + 28340 0.66 0.594645
Target:  5'- aCGCUGGCCAccCGGCGcacaaUGGACaccgcCGaGCCg -3'
miRNA:   3'- cGUGGCUGGU--GCCGC-----ACCUGa----GC-CGG- -5'
19230 3' -59.7 NC_004684.1 + 64523 0.66 0.594645
Target:  5'- gGCACCGAUgACGcCcaGcGGCUCGGCg -3'
miRNA:   3'- -CGUGGCUGgUGCcGcaC-CUGAGCCGg -5'
19230 3' -59.7 NC_004684.1 + 42099 0.66 0.594645
Target:  5'- cCGCCG-CCGCcuGGUGUGGcCggaaGGCCc -3'
miRNA:   3'- cGUGGCuGGUG--CCGCACCuGag--CCGG- -5'
19230 3' -59.7 NC_004684.1 + 20974 0.66 0.594645
Target:  5'- uGCGCCGGgaCAugcUGGcCGUGGACccgaccauccCGGCCa -3'
miRNA:   3'- -CGUGGCUg-GU---GCC-GCACCUGa---------GCCGG- -5'
19230 3' -59.7 NC_004684.1 + 18107 0.66 0.594645
Target:  5'- nCACCGAgCGCgaggccGGUGUGGACaCcGCCa -3'
miRNA:   3'- cGUGGCUgGUG------CCGCACCUGaGcCGG- -5'
19230 3' -59.7 NC_004684.1 + 39442 0.66 0.594645
Target:  5'- gGCcCCaGGCCGaGGCGUGcGGCuaccUCGGCUc -3'
miRNA:   3'- -CGuGG-CUGGUgCCGCAC-CUG----AGCCGG- -5'
19230 3' -59.7 NC_004684.1 + 60293 0.66 0.594645
Target:  5'- gGC-CCGGuCCuCGGCGgccuccagGGcCUCGGCa -3'
miRNA:   3'- -CGuGGCU-GGuGCCGCa-------CCuGAGCCGg -5'
19230 3' -59.7 NC_004684.1 + 58787 0.66 0.584324
Target:  5'- uGCACCGggcuuguucgagGCCAcCGGCGcGuucauGCUCGGCa -3'
miRNA:   3'- -CGUGGC------------UGGU-GCCGCaCc----UGAGCCGg -5'
19230 3' -59.7 NC_004684.1 + 25299 0.66 0.584324
Target:  5'- aCACCaGGCgGCGGCGguucgUCGGCCc -3'
miRNA:   3'- cGUGG-CUGgUGCCGCaccugAGCCGG- -5'
19230 3' -59.7 NC_004684.1 + 12808 0.66 0.584324
Target:  5'- cCGCCGACgACGcGCccgaGGACggCGGCUc -3'
miRNA:   3'- cGUGGCUGgUGC-CGca--CCUGa-GCCGG- -5'
19230 3' -59.7 NC_004684.1 + 18183 0.66 0.584324
Target:  5'- gGCACCGACCGacUGGCc--GACcgagcaGGCCg -3'
miRNA:   3'- -CGUGGCUGGU--GCCGcacCUGag----CCGG- -5'
19230 3' -59.7 NC_004684.1 + 43755 0.66 0.584324
Target:  5'- -gGCUGACgGuacCGGCGUGGuca-GGCCg -3'
miRNA:   3'- cgUGGCUGgU---GCCGCACCugagCCGG- -5'
19230 3' -59.7 NC_004684.1 + 66900 0.66 0.584324
Target:  5'- gGCG-CGGCCuuCGGCGcGGcCUUGGCg -3'
miRNA:   3'- -CGUgGCUGGu-GCCGCaCCuGAGCCGg -5'
19230 3' -59.7 NC_004684.1 + 57590 0.66 0.584324
Target:  5'- aGCGUCGgguGCCAcCGGCGcagGGcCUCGGCg -3'
miRNA:   3'- -CGUGGC---UGGU-GCCGCa--CCuGAGCCGg -5'
19230 3' -59.7 NC_004684.1 + 44421 0.66 0.584324
Target:  5'- cGguUCGAUgGCGGCGuUGGcgcGCUucUGGCCu -3'
miRNA:   3'- -CguGGCUGgUGCCGC-ACC---UGA--GCCGG- -5'
19230 3' -59.7 NC_004684.1 + 44929 0.66 0.584324
Target:  5'- -aACCGGCCugGaGCGcGGGCgggaUCGccGCCg -3'
miRNA:   3'- cgUGGCUGGugC-CGCaCCUG----AGC--CGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.